Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 1.4e-111 406.8 287 100.0
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 1.0e-56 224.6 247 58.3
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 1.7e-56 223.8 222 66.2
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 1.9e-55 220.3 249 60.6
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 1.9e-55 220.3 226 63.3
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 2.5e-55 219.9 224 62.1
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 2.7e-54 216.5 262 53.1
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 3.6e-54 216.1 216 64.4
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 3.6e-54 216.1 259 56.8
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 7.9e-54 214.9 247 51.0
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 3.3e-52 209.5 220 73.2
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 1.3e-51 207.6 213 75.1
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 6.3e-51 205.3 216 61.1
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 1.1e-50 204.5 247 54.7
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 1.8e-50 203.8 230 61.7
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 2.4e-50 203.4 217 72.8
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 5.3e-50 202.2 209 58.4
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 7.0e-50 201.8 240 67.1
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 7.0e-50 201.8 225 69.8
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 9.1e-50 201.4 245 60.4
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 1.2e-49 201.1 225 61.3
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 3.5e-49 199.5 242 51.2
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 5.9e-49 198.7 235 55.3
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 7.7e-49 198.4 213 70.4
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 2.2e-48 196.8 263 47.9
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 2.9e-48 196.4 224 66.5
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 3.8e-48 196.1 214 65.0
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 1.1e-47 194.5 222 66.2
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 1.1e-47 194.5 252 63.9
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.4e-47 194.1 240 55.0
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 3.2e-47 193.0 267 47.2
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 5.5e-47 192.2 286 42.7
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 3.6e-46 189.5 239 53.6
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 4.7e-46 189.1 233 52.8
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 6.1e-46 188.7 240 60.0
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 6.1e-46 188.7 221 66.1
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 8.0e-46 188.3 270 56.3
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 1.0e-45 188.0 270 53.0
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 1.8e-45 187.2 221 63.3
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 3.0e-45 186.4 216 55.1
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 3.9e-45 186.0 270 48.5
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 5.2e-45 185.7 239 53.6
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 5.2e-45 185.7 234 54.7
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 6.7e-45 185.3 212 58.0
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 6.7e-45 185.3 243 52.3
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 8.8e-45 184.9 239 53.1
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 8.8e-45 184.9 239 53.1
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 8.8e-45 184.9 239 53.1
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 8.8e-45 184.9 275 44.0
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 2.0e-44 183.7 244 55.3
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 2.0e-44 183.7 278 56.1
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 2.0e-44 183.7 278 56.1
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 2.0e-44 183.7 235 56.6
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 2.0e-44 183.7 219 63.5
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 4.4e-44 182.6 239 52.7
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 5.7e-44 182.2 222 57.7
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 5.7e-44 182.2 239 57.3
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 1.7e-43 180.6 235 55.7
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 4.8e-43 179.1 245 51.0
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 6.3e-43 178.7 222 65.8
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 8.2e-43 178.3 222 60.4
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 1.1e-42 177.9 167 50.3
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 1.4e-42 177.6 283 44.2
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 2.4e-42 176.8 255 49.4
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 2.4e-42 176.8 240 62.5
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 3.1e-42 176.4 256 49.6
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 4.1e-42 176.0 216 62.0
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 5.3e-42 175.6 168 67.3
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 7.0e-42 175.3 279 46.2
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 9.1e-42 174.9 221 58.4
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 1.2e-41 174.5 252 54.4
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 1.2e-41 174.5 221 48.9
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 7.7e-41 171.8 214 55.1
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 1.3e-40 171.0 214 68.2
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 2.9e-40 169.9 272 51.1
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 5.0e-40 169.1 265 58.9
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 8.5e-40 168.3 314 50.3
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 1.5e-39 167.5 281 49.8
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 7.2e-39 165.2 213 68.5
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 7.2e-39 165.2 213 68.5
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 1.2e-38 164.5 150 66.0
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 1.2e-38 164.5 271 48.7
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 6.1e-38 162.2 242 57.4
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 2.3e-37 160.2 214 50.9
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 2.0e-36 157.1 240 49.2
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 2.6e-36 156.8 253 56.1
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 1.7e-35 154.1 202 56.9
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 3.7e-35 152.9 147 55.8
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 4.8e-35 152.5 260 49.6
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 7.0e-34 148.7 134 66.4
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 9.1e-34 148.3 264 46.2
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 3.5e-33 146.4 213 65.3
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 7.7e-33 145.2 289 45.3
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 5.0e-32 142.5 241 62.2
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 8.5e-32 141.7 218 46.3
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 8.5e-32 141.7 218 46.3
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 3.2e-31 139.8 161 60.2
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 2.1e-30 137.1 286 41.6
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 8.0e-30 135.2 147 49.7
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 5.7e-28 129.0 169 53.3
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 6.3e-27 125.6 144 45.8
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 1.2e-25 121.3 131 61.8
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 1.5e-23 114.4 66 77.3
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 1.6e-22 110.9 129 48.1
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 6.8e-21 105.5 106 69.8
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 2.6e-20 103.6 148 54.7
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 3.2e-18 96.7 147 38.1
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 9.5e-15 85.1 173 43.9
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 3.6e-14 83.2 276 36.2
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 2.0e-12 77.4 105 40.0
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 3.2e-10 70.1 141 45.4
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 7.0e-10 68.9 215 39.5
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 2.0e-09 67.4 109 46.8
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 1.0e-08 65.1 213 32.9
QL05p075461 Quercus lobata HOM05D006314 ORTHO05D030082 4.3e-07 59.7 68 44.1
QL08p032503 Quercus lobata HOM05D006314 ORTHO05D030082 5.6e-07 59.3 46 56.5
MD10G1313900 Malus domestica HOM05D006314 ORTHO05D030082 1.2e-06 58.2 37 59.5
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 2.8e-06 57.0 26 92.3


User provided reference genes

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