Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 2140.2 1060 100.0
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1805.0 1071 83.0
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1796.9 1062 83.5
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 0.0e+00 1779.6 1066 82.4
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 0.0e+00 1767.3 1064 81.0
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1765.0 1065 81.5
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 0.0e+00 1759.6 1065 82.1
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 0.0e+00 1755.0 1067 81.6
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 0.0e+00 1748.8 1065 81.1
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 0.0e+00 1742.2 1065 81.5
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1737.6 1065 80.7
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 0.0e+00 1729.5 1065 79.2
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1728.4 1065 79.6
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 0.0e+00 1727.2 1063 79.9
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 0.0e+00 1724.5 1065 79.2
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 0.0e+00 1719.9 1064 81.2
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 0.0e+00 1719.5 1065 80.6
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 0.0e+00 1719.1 1065 80.0
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1719.1 1065 79.9
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1718.7 1064 79.8
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1718.7 1067 80.2
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 0.0e+00 1718.0 1066 78.8
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 0.0e+00 1717.2 1065 79.7
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1716.8 1067 80.8
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1714.1 1065 79.2
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1711.0 1064 80.8
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1709.5 1063 80.6
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1703.7 1066 79.5
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 0.0e+00 1699.5 1072 78.6
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 0.0e+00 1697.2 1073 78.3
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1696.0 1061 79.3
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1694.5 1065 80.0
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1692.6 1064 77.8
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1691.4 1065 78.2
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1689.9 1064 77.7
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 0.0e+00 1686.0 1065 78.1
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 0.0e+00 1685.6 1065 78.6
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1682.2 1112 76.3
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1682.2 1067 78.6
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1680.2 1064 78.3
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1679.8 1064 78.3
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 0.0e+00 1676.4 1062 78.2
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 0.0e+00 1676.4 1062 78.2
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 0.0e+00 1675.6 1057 78.1
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 0.0e+00 1675.2 1062 78.2
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1672.9 1064 78.0
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1671.0 1064 77.6
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 0.0e+00 1671.0 1190 71.9
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 0.0e+00 1670.6 1062 78.1
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1662.9 1080 77.3
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1662.1 1064 77.5
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1661.7 1016 81.1
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1659.4 1065 77.7
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1659.0 1064 77.3
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1659.0 1065 77.1
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1658.3 1062 77.4
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 0.0e+00 1655.6 1064 77.3
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 0.0e+00 1654.8 1068 77.2
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1652.5 1066 76.5
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 0.0e+00 1651.3 1063 77.2
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 0.0e+00 1649.8 1069 77.4
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1647.5 1062 76.9
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1639.8 1063 76.1
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1639.4 1067 75.9
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 0.0e+00 1638.6 1070 75.7
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 0.0e+00 1638.2 1007 80.9
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1633.6 1079 75.8
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 0.0e+00 1631.7 1083 76.2
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1630.5 1057 77.3
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1628.2 1059 76.3
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1627.1 1141 73.4
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 0.0e+00 1622.8 1065 75.3
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1620.9 1065 75.7
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 0.0e+00 1619.4 1081 75.3
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 0.0e+00 1617.8 1066 76.0
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 0.0e+00 1617.8 1065 76.4
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 0.0e+00 1612.8 1064 75.7
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 0.0e+00 1612.8 1093 75.1
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1610.1 1085 74.5
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1610.1 1085 74.5
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 0.0e+00 1607.8 1063 74.7
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 0.0e+00 1605.5 1072 74.9
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 0.0e+00 1604.3 1070 75.0
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 0.0e+00 1602.0 1057 75.6
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1598.9 1078 74.8
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1598.9 1079 74.1
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1597.8 1079 74.1
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1597.8 1079 74.1
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 0.0e+00 1593.6 1078 75.6
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 0.0e+00 1592.8 1080 73.9
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1589.3 1019 77.0
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1586.6 1064 73.4
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1585.9 1073 75.1
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 0.0e+00 1580.5 1098 72.3
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1576.6 1076 73.6
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1576.2 1073 74.7
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 0.0e+00 1562.7 1112 72.2
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1557.3 1068 73.5
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 0.0e+00 1545.8 1066 73.2
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1531.9 1076 73.3
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 0.0e+00 1510.4 1071 71.1
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1507.3 1062 72.3
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1494.6 1015 74.3
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 0.0e+00 1492.6 1093 71.2
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1491.1 1066 70.3
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 0.0e+00 1488.4 1071 70.5
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 0.0e+00 1458.0 1066 69.0
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1428.3 954 74.7
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 0.0e+00 1424.5 1025 69.4
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1365.9 864 79.5
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 0.0e+00 1316.2 1064 64.6
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 0.0e+00 1310.4 958 69.8
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1295.8 1106 61.2
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 0.0e+00 1281.5 1038 64.9
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1209.5 1062 59.5
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1187.2 795 75.7
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 0.0e+00 1182.2 1067 61.1
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 0.0e+00 1164.4 810 73.5
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 0.0e+00 1129.8 759 75.6
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 2.0e-299 1032.7 689 76.8
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 8.0e-293 1010.7 754 68.3
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 5.0e-279 964.9 1091 49.0
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 2.0e-275 953.0 1081 50.0
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 6.6e-255 884.8 869 55.2
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 4.0e-244 849.0 928 51.7
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 3.3e-222 776.2 936 45.6
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 6.5e-194 682.2 493 71.8
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 2.4e-172 610.5 461 65.3
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 1.4e-151 541.6 354 75.7
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 3.2e-148 530.4 724 43.6
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 3.2e-148 530.4 476 59.0
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.6e-134 484.2 280 82.1
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 3.9e-130 470.3 384 66.9
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 1.8e-127 461.5 1178 30.1
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 4.3e-113 413.7 236 81.8
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 1.9e-108 398.3 235 80.0
Lsat_1_v5_gn_7_19581 Lactuca sativa HOM05D003523 ORTHO05D004493 3.3e-97 360.9 232 74.6
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 7.1e-92 343.2 240 67.1
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 5.1e-90 337.0 260 68.1
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 2.2e-80 305.1 300 57.0
Glyma.15G072332 Glycine max HOM05D003523 ORTHO05D004493 3.4e-78 297.7 177 75.7
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 2.0e-70 271.9 381 43.0
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 5.0e-69 267.3 363 45.7
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 1.1e-65 256.1 196 66.3
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 5.3e-63 247.3 263 52.9
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 4.0e-58 231.1 253 49.8
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 2.2e-48 198.7 266 47.0
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 7.2e-44 183.7 167 56.3
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 4.4e-41 174.5 123 73.2
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 5.7e-41 174.1 120 73.3
Medtr2g013150 Medicago truncatula HOM05D003523 ORTHO05D004493 3.7e-40 171.4 156 60.3
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.1e-35 155.6 107 72.0
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 5.2e-34 151.0 134 61.9
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.4e-23 115.5 57 91.2
Psat1g020360 Pisum sativum HOM05D003523 ORTHO05D014542 2.0e-22 112.5 76 73.7
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.3e-21 109.0 70 81.4
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 1.1e-18 100.1 128 53.1
Medtr5g040120 Medicago truncatula HOM05D003523 ORTHO05D004493 1.1e-18 100.1 76 65.8
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 4.0e-18 98.2 118 50.0
Medtr7g039500 Medicago truncatula HOM05D003523 ORTHO05D004493 8.9e-18 97.1 68 67.6
Psat0s3229g0080 Pisum sativum HOM05D003523 ORTHO05D004493 3.2e-15 88.6 68 64.7
Psat0s4489g0120 Pisum sativum HOM05D003523 ORTHO05D004493 5.4e-15 87.8 68 61.8
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 3.5e-14 85.1 59 76.3
Lsat_1_v5_gn_8_47460 Lactuca sativa HOM05D003523 ORTHO05D004021 1.5e-12 79.7 58 63.8
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 2.5e-12 79.0 61 72.1
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 3.4e-09 68.6 80 47.5
Medtr3g057920 Medicago truncatula HOM05D003523 ORTHO05D004493 4.4e-09 68.2 93 43.0
Psat6g243040 Pisum sativum HOM05D003523 ORTHO05D004493 5.8e-09 67.8 56 55.4
Lsat_1_v5_gn_6_40740 Lactuca sativa HOM05D000146 ORTHO05D002370 1.9e-07 62.8 33 81.8
Lsat_1_v5_gn_8_41901 Lactuca sativa HOM05D003523 ORTHO05D232231 1.9e-07 62.8 33 81.8
Lsat_1_v5_gn_6_42641 Lactuca sativa HOM05D000146 ORTHO05D002370 2.4e-07 62.4 33 81.8
Lsat_1_v5_gn_9_124840 Lactuca sativa HOM05D003523 ORTHO05D233239 5.4e-07 61.2 33 81.8
GSVIVG01004520001 Vitis vinifera HOM05D003523 ORTHO05D004493 5.4e-07 61.2 30 83.3
Lsat_1_v5_gn_2_131541 Lactuca sativa HOM05D002783 ORTHO05D229066 1.2e-06 60.1 33 75.8
Lsat_1_v5_gn_8_106681 Lactuca sativa HOM05D003523 ORTHO05D228780 2.7e-06 58.9 33 78.8
Medtr4g010370 Medicago truncatula HOM05D003523 ORTHO05D004493 7.8e-06 57.4 30 76.7


User provided reference genes

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