Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 7.4e-30 133.3 70 100.0
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 5.3e-20 100.5 69 75.4
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 5.5e-17 90.5 69 65.2
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.2e-17 90.1 68 69.1
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 9.4e-17 89.7 68 69.1
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 3.6e-16 87.8 68 64.7
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.6e-16 87.8 68 66.2
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 8.0e-16 86.7 69 63.8
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.3e-15 85.1 69 60.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.3e-15 85.1 69 63.8
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 3.0e-15 84.7 69 63.8
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 3.0e-15 84.7 69 60.9
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 3.9e-15 84.3 69 60.9
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.9e-15 84.3 69 63.8
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 3.9e-15 84.3 69 63.8
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.7e-15 83.6 69 62.3
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.1e-14 82.8 69 63.8
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.5e-14 82.4 69 60.9
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.5e-14 82.4 69 60.9
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 2.0e-14 82.0 69 60.9
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 2.0e-14 82.0 71 63.4
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.0e-14 82.0 69 62.3
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 2.0e-14 82.0 69 59.4
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 2.6e-14 81.6 69 60.9
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 3.3e-14 81.3 69 59.4
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 3.3e-14 81.3 70 55.7
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 3.3e-14 81.3 69 58.0
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.4e-14 80.9 69 59.4
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.7e-14 80.5 69 59.4
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 5.7e-14 80.5 69 58.0
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 5.7e-14 80.5 69 60.9
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 7.4e-14 80.1 69 59.4
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 7.4e-14 80.1 69 58.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 7.4e-14 80.1 69 60.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 7.4e-14 80.1 69 60.9
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 7.4e-14 80.1 70 60.0
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 9.7e-14 79.7 69 58.0
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 9.7e-14 79.7 70 60.0
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.3e-13 79.3 69 60.9
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.3e-13 79.3 69 59.4
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.3e-13 79.3 69 56.5
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.3e-13 79.3 69 56.5
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.3e-13 79.3 69 58.0
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.3e-13 79.3 69 58.0
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.3e-13 79.3 69 58.0
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.7e-13 79.0 69 59.4
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.7e-13 79.0 69 60.9
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.7e-13 79.0 71 64.8
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.7e-13 79.0 71 64.8
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.2e-13 78.6 67 61.2
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.8e-13 78.2 69 59.4
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.8e-13 78.2 70 60.0
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.8e-13 78.2 70 60.0
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 2.8e-13 78.2 70 54.3
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 2.8e-13 78.2 70 54.3
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 3.7e-13 77.8 69 56.5
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 3.7e-13 77.8 69 58.0
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 3.7e-13 77.8 70 60.0
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 3.7e-13 77.8 69 55.1
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.8e-13 77.4 69 59.4
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 6.3e-13 77.0 69 58.0
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 6.3e-13 77.0 70 61.4
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 6.3e-13 77.0 69 55.1
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 8.2e-13 76.6 70 60.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.2e-13 76.6 70 60.0
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.2e-13 76.6 70 60.0
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 8.2e-13 76.6 70 57.1
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 8.2e-13 76.6 69 58.0
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.4e-12 75.9 69 55.1
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.8e-12 75.5 70 58.6
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.4e-12 75.1 70 58.6
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 2.4e-12 75.1 65 58.5
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.4e-12 75.1 69 55.1
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 3.1e-12 74.7 71 60.6
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.1e-12 74.7 68 55.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 4.1e-12 74.3 69 53.6
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 5.3e-12 73.9 71 59.2
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 5.3e-12 73.9 70 57.1
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 5.3e-12 73.9 70 54.3
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 9.1e-12 73.2 69 55.1
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 9.1e-12 73.2 70 55.7
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 9.1e-12 73.2 70 58.6
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 9.1e-12 73.2 69 55.1
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 1.2e-11 72.8 66 57.6
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.6e-11 72.4 69 53.6
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 2.0e-11 72.0 69 50.7
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.0e-11 72.0 69 50.7
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.6e-11 71.6 69 55.1
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.6e-11 71.6 70 57.1
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 5.9e-11 70.5 70 54.3
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 5.9e-11 70.5 68 51.5
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 7.7e-11 70.1 69 46.4
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.0e-10 69.7 71 50.7
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.3e-10 69.3 71 52.1
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.7e-10 68.9 70 52.9
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.7e-10 68.9 70 52.9
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.2e-10 68.6 67 53.7
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.8e-10 67.8 71 50.7
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 3.8e-10 67.8 69 44.9
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 6.5e-10 67.0 69 55.1
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 8.5e-10 66.6 70 51.4
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.1e-09 66.2 67 50.7
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.1e-09 66.2 69 52.2
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.5e-09 65.9 69 42.0
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.9e-09 65.5 70 48.6
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 3.2e-09 64.7 71 47.9
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 3.2e-09 64.7 71 47.9
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 3.2e-09 64.7 71 47.9
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 3.2e-09 64.7 71 47.9
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.2e-09 64.7 71 47.9
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.2e-08 62.8 67 49.3
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 4.7e-08 60.8 56 57.1
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 5.2e-07 57.4 69 39.1
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 5.2e-07 57.4 70 42.9
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 6.7e-07 57.0 61 47.5


User provided reference genes

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