Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0000740 Simmondsia chinensis HOM05D002084 ORTHO05D002031 1.0e-52 209.9 114 100.0
Sc10g0003680 Simmondsia chinensis HOM05D002084 ORTHO05D002031 1.4e-17 93.2 95 57.9
EL10Ac5g10416 Beta vulgaris HOM05D002084 ORTHO05D002031 2.4e-17 92.4 61 72.1
DCAR_005699 Daucus carota HOM05D002084 ORTHO05D002031 2.6e-16 89.0 62 62.9
Actinidia08529 Actinidia chinensis HOM05D002084 ORTHO05D002031 3.4e-16 88.6 92 52.2
AUR62001297 Chenopodium quinoa HOM05D002084 ORTHO05D002031 4.5e-16 88.2 69 63.8
AUR62011890 Chenopodium quinoa HOM05D002084 ORTHO05D002031 4.5e-16 88.2 62 66.1
AUR62025682 Chenopodium quinoa HOM05D002084 ORTHO05D002031 4.5e-16 88.2 79 59.5
Ah.11g049640 Amaranthus hybridus HOM05D002084 ORTHO05D002031 5.8e-16 87.8 69 62.3
AUR62024731 Chenopodium quinoa HOM05D002084 ORTHO05D002031 5.8e-16 87.8 62 66.1
Hund02906 Selenicereus undatus HOM05D002084 ORTHO05D002031 9.9e-16 87.0 90 52.2
Dinv22417 Davidia involucrata HOM05D002084 ORTHO05D002031 2.2e-15 85.9 59 67.8
TAR633G0639 Trochodendron aralioides HOM05D002084 ORTHO05D002031 2.2e-15 85.9 60 68.3
Cpa.g.sc50.34 Carica papaya HOM05D002084 ORTHO05D002031 4.9e-15 84.7 92 50.0
Gohir.A11G129800 Gossypium hirsutum HOM05D002084 ORTHO05D002031 6.4e-15 84.3 92 47.8
Dinv34608 Davidia involucrata HOM05D002084 ORTHO05D002031 8.4e-15 84.0 59 66.1
Rhsim01G0265300 Rhododendron simsii HOM05D002084 ORTHO05D002031 1.9e-14 82.8 91 46.2
Thecc.01G260600 Theobroma cacao HOM05D002084 ORTHO05D002031 1.9e-14 82.8 92 48.9
vmacro02652 Vaccinium macrocarpon HOM05D002084 ORTHO05D002031 1.9e-14 82.8 91 48.4
Hma1.2p1_0273F.1_g109850 Hydrangea macrophylla HOM05D002084 ORTHO05D002031 2.4e-14 82.4 59 62.7
Actinidia12889 Actinidia chinensis HOM05D002084 ORTHO05D002031 3.2e-14 82.0 92 47.8
Gohir.D11G135500 Gossypium hirsutum HOM05D002084 ORTHO05D002031 3.2e-14 82.0 92 46.7
Gorai.007G145100 Gossypium raimondii HOM05D002084 ORTHO05D002031 3.2e-14 82.0 92 46.7
Duzib133G1121 Durio zibethinus HOM05D002084 ORTHO05D002031 4.2e-14 81.6 92 47.8
Haze_24608 Corylus avellana HOM05D002084 ORTHO05D002031 5.4e-14 81.3 68 57.4
Manes.04G076400 Manihot esculenta HOM05D002084 ORTHO05D002031 5.4e-14 81.3 58 65.5
QL02p059458 Quercus lobata HOM05D002084 ORTHO05D002031 7.1e-14 80.9 59 62.7
Ciclev10019292m.g Citrus clementina HOM05D002084 ORTHO05D002031 9.3e-14 80.5 59 66.1
Manes.12G031300 Manihot esculenta HOM05D002084 ORTHO05D002031 9.3e-14 80.5 91 48.4
Medtr1g070170 Medicago truncatula HOM05D002084 ORTHO05D002031 9.3e-14 80.5 61 60.7
QL03p020315 Quercus lobata HOM05D002084 ORTHO05D002031 9.3e-14 80.5 59 62.7
Nitab4.5_0000086g0110 Nicotiana tabacum HOM05D002084 ORTHO05D002031 1.2e-13 80.1 59 66.1
TAR362G0949 Trochodendron aralioides HOM05D002084 ORTHO05D002031 1.2e-13 80.1 60 61.7
CANSAT25G3490 Cannabis sativa HOM05D002084 ORTHO05D002031 1.6e-13 79.7 59 59.3
COL.COLO4_05172 Corchorus olitorius HOM05D002084 ORTHO05D002031 1.6e-13 79.7 92 47.8
Lj2C1154T3 Lonicera japonica HOM05D002084 ORTHO05D002031 1.6e-13 79.7 60 61.7
Rhsim13G0033900 Rhododendron simsii HOM05D002084 ORTHO05D002031 1.6e-13 79.7 99 43.4
THA.LOC104826211 Tarenaya hassleriana HOM05D002084 ORTHO05D002031 1.6e-13 79.7 92 50.0
TPR.G3552 Trifolium pratense HOM05D002084 ORTHO05D002031 1.6e-13 79.7 61 59.0
GSVIVG01028303001 Vitis vinifera HOM05D002084 ORTHO05D002031 1.6e-13 79.7 91 46.2
Aa31LG5G5680 Aethionema arabicum HOM05D002084 ORTHO05D002031 2.1e-13 79.3 61 60.7
Duzib138G0341 Durio zibethinus HOM05D002084 ORTHO05D002031 2.1e-13 79.3 92 44.6
CiPaw.03G262500 Carya illinoinensis HOM05D002084 ORTHO05D002031 2.7e-13 79.0 59 62.7
SHI09839 Sapria himalayana HOM05D002084 ORTHO05D002031 2.7e-13 79.0 60 60.0
MSTRG.18315 Avicennia marina HOM05D002084 ORTHO05D002031 3.5e-13 78.6 66 59.1
MSTRG.21501 Avicennia marina HOM05D002084 ORTHO05D002031 3.5e-13 78.6 90 45.6
Cfa002408 Carpinus fangiana HOM05D002084 ORTHO05D002031 3.5e-13 78.6 68 55.9
vmacro17191 Vaccinium macrocarpon HOM05D002084 ORTHO05D002031 3.5e-13 78.6 59 59.3
Gohir.A07G211800 Gossypium hirsutum HOM05D002084 ORTHO05D002031 6.0e-13 77.8 61 60.7
Gohir.D07G218000 Gossypium hirsutum HOM05D002084 ORTHO05D002031 6.0e-13 77.8 61 60.7
TWI75G1405 Tripterygium wilfordii HOM05D002084 ORTHO05D002031 6.0e-13 77.8 58 67.2
BcaB01g04051 Brassica carinata HOM05D002084 ORTHO05D002031 7.9e-13 77.4 59 62.7
BcaC01g05962 Brassica carinata HOM05D002084 ORTHO05D002031 7.9e-13 77.4 59 62.7
Nitab4.5_0000326g0050 Nicotiana tabacum HOM05D002084 ORTHO05D002031 7.9e-13 77.4 59 61.0
Solyc01g006140.4 Solanum lycopersicum HOM05D002084 ORTHO05D002031 7.9e-13 77.4 61 59.0
Sopen01g002140 Solanum pennellii HOM05D002084 ORTHO05D002031 7.9e-13 77.4 61 59.0
THA.LOC104800876 Tarenaya hassleriana HOM05D002084 ORTHO05D002031 7.9e-13 77.4 91 47.3
arahy.Tifrunner.gnm1.ann1.5K77QF Arachis hypogaea HOM05D002084 ORTHO05D002031 1.3e-12 76.6 59 59.3
arahy.Tifrunner.gnm1.ann1.JT4IXE Arachis hypogaea HOM05D002084 ORTHO05D002031 1.3e-12 76.6 92 45.7
Prupe.8G217800 Prunus persica HOM05D002084 ORTHO05D002031 1.3e-12 76.6 61 59.0
Rhsim02G0234000 Rhododendron simsii HOM05D002084 ORTHO05D002031 1.3e-12 76.6 100 44.0
CSS0041134 Camellia sinensis var. sinensis HOM05D002084 ORTHO05D002031 1.8e-12 76.3 68 52.9
Ca_09690_v3 Cicer arietinum L. HOM05D002084 ORTHO05D002031 1.8e-12 76.3 61 59.0
Gorai.001G252100 Gossypium raimondii HOM05D002084 ORTHO05D002031 1.8e-12 76.3 92 45.7
Lalb_Chr21g0313811 Lupinus albus HOM05D002084 ORTHO05D002031 1.8e-12 76.3 59 59.3
Nitab4.5_0000326g0070 Nicotiana tabacum HOM05D002084 ORTHO05D002031 1.8e-12 76.3 59 59.3
Nitab4.5_0001327g0080 Nicotiana tabacum HOM05D002084 ORTHO05D002031 1.8e-12 76.3 92 45.7
Potri.002G040100 Populus trichocarpa HOM05D002084 ORTHO05D002031 1.8e-12 76.3 58 62.1
Potri.005G222700 Populus trichocarpa HOM05D002084 ORTHO05D002031 1.8e-12 76.3 58 62.1
Sabra02G0032100 Salix brachista HOM05D002084 ORTHO05D002031 1.8e-12 76.3 58 60.3
TWI12G1429 Tripterygium wilfordii HOM05D002084 ORTHO05D002031 1.8e-12 76.3 58 63.8
Lj5g0022506 Lotus japonicus HOM05D002084 ORTHO05D002031 2.3e-12 75.9 100 44.0
Nn1g02724 Nelumbo nucifera HOM05D002084 ORTHO05D002031 2.3e-12 75.9 59 59.3
Peaxi162Scf00018g02016 Petunia axillaris HOM05D002084 ORTHO05D002031 2.3e-12 75.9 92 44.6
Nitab4.5_0005119g0030 Nicotiana tabacum HOM05D002084 ORTHO05D002031 3.0e-12 75.5 92 45.7
Peaxi162Scf00134g00713 Petunia axillaris HOM05D002084 ORTHO05D002031 3.0e-12 75.5 58 62.1
AL4G26500 Arabidopsis lyrata HOM05D002084 ORTHO05D002031 3.9e-12 75.1 60 58.3
Aa31sc13G110 Aethionema arabicum HOM05D002084 ORTHO05D002031 5.1e-12 74.7 61 55.7
AT2G31270 Arabidopsis thaliana HOM05D002084 ORTHO05D002031 5.1e-12 74.7 92 47.8
Cc01_g18450 Coffea canephora HOM05D002084 ORTHO05D002031 5.1e-12 74.7 90 46.7
MD10G1178300 Malus domestica HOM05D002084 ORTHO05D002031 5.1e-12 74.7 61 57.4
QL09p009162 Quercus lobata HOM05D002084 ORTHO05D002031 5.1e-12 74.7 59 57.6
Sp4g13750 Schrenkiella parvula HOM05D002084 ORTHO05D002031 5.1e-12 74.7 92 45.7
EL10Ac7g18099 Beta vulgaris HOM05D002084 ORTHO05D002031 6.7e-12 74.3 48 75.0
Aqoxy2G03864 Aquilegia oxysepala HOM05D002084 ORTHO05D002031 8.7e-12 73.9 60 58.3
BcaB02g10368 Brassica carinata HOM05D002084 ORTHO05D002031 8.7e-12 73.9 92 44.6
Carub.0004s1254 Capsella rubella HOM05D002084 ORTHO05D002031 8.7e-12 73.9 92 46.7
CAN.G140.25 Capsicum annuum HOM05D002084 ORTHO05D002031 8.7e-12 73.9 61 57.4
Migut.K00217 Erythranthe guttata HOM05D002084 ORTHO05D002031 8.7e-12 73.9 57 66.7
Nitab4.5_0009021g0010 Nicotiana tabacum HOM05D002084 ORTHO05D002031 8.7e-12 73.9 59 57.6
Aa31LG1G7150 Aethionema arabicum HOM05D002084 ORTHO05D002031 1.1e-11 73.6 103 40.8
BcaC02g11206 Brassica carinata HOM05D002084 ORTHO05D002031 1.1e-11 73.6 92 44.6
A05p14470 Brassica napus HOM05D002084 ORTHO05D002031 1.1e-11 73.6 92 44.6
C04p19240 Brassica napus HOM05D002084 ORTHO05D002031 1.1e-11 73.6 92 44.6
BolC4t23457H Brassica oleracea HOM05D002084 ORTHO05D002031 1.1e-11 73.6 92 44.6
BraA05t20376Z Brassica rapa HOM05D002084 ORTHO05D002031 1.1e-11 73.6 92 44.6
CARHR124860 Cardamine hirsuta HOM05D002084 ORTHO05D002031 1.1e-11 73.6 92 44.6
Lalb_Chr02g0152301 Lupinus albus HOM05D002084 ORTHO05D002031 1.1e-11 73.6 59 57.6
Atru.chr5.1647 Acer truncatum HOM05D002084 ORTHO05D002031 1.5e-11 73.2 59 55.9
AL4G26490 Arabidopsis lyrata HOM05D002084 ORTHO05D002031 1.5e-11 73.2 92 46.7
BcaB06g28440 Brassica carinata HOM05D002084 ORTHO05D002031 1.5e-11 73.2 61 55.7
Thhalv10016441m.g Eutrema salsugineum HOM05D002084 ORTHO05D002031 1.5e-11 73.2 90 44.4
Peaxi162Scf00441g00218 Petunia axillaris HOM05D002084 ORTHO05D002031 1.5e-11 73.2 59 57.6
PGR044G1008 Punica granatum HOM05D002084 ORTHO05D002031 1.5e-11 73.2 61 52.5
BcaC01g05963 Brassica carinata HOM05D002084 ORTHO05D002031 1.9e-11 72.8 92 43.5
C03p20650 Brassica napus HOM05D002084 ORTHO05D002031 1.9e-11 72.8 92 43.5
BolC3t14459H Brassica oleracea HOM05D002084 ORTHO05D002031 1.9e-11 72.8 92 43.5
A03p17470 Brassica napus HOM05D002084 ORTHO05D002031 2.5e-11 72.4 92 43.5
BraA03t11020Z Brassica rapa HOM05D002084 ORTHO05D002031 2.5e-11 72.4 92 43.5
MD05G1158100 Malus domestica HOM05D002084 ORTHO05D002031 2.5e-11 72.4 61 57.4
CiPaw.04G185600 Carya illinoinensis HOM05D002084 ORTHO05D002031 3.3e-11 72.0 59 57.6
MBI17_g07969_MAGBIO Magnolia biondii HOM05D002084 ORTHO05D002031 3.3e-11 72.0 59 54.2
Oeu060955.2 Olea europaea HOM05D002084 ORTHO05D002031 3.3e-11 72.0 90 42.2
BcaB06g28521 Brassica carinata HOM05D002084 ORTHO05D002031 4.3e-11 71.6 92 42.4
ECA247G3646 Erigeron canadensis HOM05D002084 ORTHO05D002031 5.6e-11 71.2 92 41.3
Sabra05G0171400 Salix brachista HOM05D002084 ORTHO05D002031 5.6e-11 71.2 58 55.2
THA.LOC104825264 Tarenaya hassleriana HOM05D002084 ORTHO05D002031 5.6e-11 71.2 60 53.3
Aqoxy2G03277 Aquilegia oxysepala HOM05D002084 ORTHO05D002031 7.4e-11 70.9 60 56.7
C04p60780 Brassica napus HOM05D002084 ORTHO05D002031 7.4e-11 70.9 92 41.3
BolC4t27569H Brassica oleracea HOM05D002084 ORTHO05D002031 7.4e-11 70.9 92 41.3
FvH4_2g21720 Fragaria vesca HOM05D002084 ORTHO05D002031 7.4e-11 70.9 58 56.9
FAN15G1144 Fragaria x ananassa HOM05D002084 ORTHO05D002031 9.6e-11 70.5 58 56.9
FAN27G3115 Fragaria x ananassa HOM05D002084 ORTHO05D002031 9.6e-11 70.5 58 56.9
FAN27G3355 Fragaria x ananassa HOM05D002084 ORTHO05D002031 9.6e-11 70.5 58 56.9
RcHm_v2.0_Chr6g0288401 Rosa chinensis HOM05D002084 ORTHO05D002031 9.6e-11 70.5 58 56.9
Sed0018460 Sechium edule HOM05D002084 ORTHO05D002031 1.3e-10 70.1 90 45.6
Phvul.007G194400 Phaseolus vulgaris HOM05D002084 ORTHO05D002031 2.1e-10 69.3 61 54.1
Nitab4.5_0005477g0030 Nicotiana tabacum HOM05D002084 ORTHO05D002031 2.8e-10 68.9 59 52.5
SalBow1G3741 Salvia bowleyana HOM05D002084 ORTHO05D002031 2.8e-10 68.9 59 59.3
FAN24G0479 Fragaria x ananassa HOM05D002084 ORTHO05D002031 4.8e-10 68.2 58 55.2
Nn2g14024 Nelumbo nucifera HOM05D002084 ORTHO05D002031 4.8e-10 68.2 58 53.4
PSO170G3910 Papaver somniferum HOM05D002084 ORTHO05D002031 4.8e-10 68.2 60 48.3
PSO782G2204 Papaver somniferum HOM05D002084 ORTHO05D002031 6.2e-10 67.8 60 48.3
PSO782G4650 Papaver somniferum HOM05D002084 ORTHO05D002031 6.2e-10 67.8 60 48.3
Solyc06g008510.3 Solanum lycopersicum HOM05D002084 ORTHO05D002031 6.2e-10 67.8 92 43.5
Sopen06g003280 Solanum pennellii HOM05D002084 ORTHO05D002031 6.2e-10 67.8 92 43.5
SGA_v2.0_scaffold138G35250 Striga asiatica HOM05D002084 ORTHO05D002031 6.2e-10 67.8 90 42.2
Eucgr.K03269 Eucalyptus grandis HOM05D002084 ORTHO05D002031 1.1e-09 67.0 59 47.5
PSO478G1725 Papaver somniferum HOM05D002084 ORTHO05D002031 1.1e-09 67.0 60 46.7
Sed0024965 Sechium edule HOM05D002084 ORTHO05D002031 1.1e-09 67.0 58 58.6
PGSC0003DMG400010892 Solanum tuberosum HOM05D002084 ORTHO05D002031 1.4e-09 66.6 92 43.5
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.4e-09 66.6 90 42.2
ClCG07G000960 Citrullus lanatus HOM05D002084 ORTHO05D002031 3.1e-09 65.5 90 43.3
VMungo0720G2946 Vigna mungo HOM05D002084 ORTHO05D002031 3.1e-09 65.5 100 42.0
VMungo1309G2434 Vigna mungo HOM05D002084 ORTHO05D002031 3.1e-09 65.5 92 43.5
CAN.G1449.8 Capsicum annuum HOM05D002084 ORTHO05D002031 5.3e-09 64.7 91 38.5
Aqoxy2G03628 Aquilegia oxysepala HOM05D002084 ORTHO05D002031 9.0e-09 63.9 99 40.4
Prupe.8G189500 Prunus persica HOM05D002084 ORTHO05D002031 1.2e-08 63.5 61 47.5
CsaV3_3G022530 Cucumis sativus L. HOM05D002084 ORTHO05D002031 1.5e-08 63.2 58 55.2
CsaV3_3G022540 Cucumis sativus L. HOM05D002084 ORTHO05D002031 1.5e-08 63.2 58 55.2
HanXRQChr10g0281071 Helianthus annuus HOM05D002084 ORTHO05D002031 1.5e-08 63.2 92 38.0
Phvul.009G001100 Phaseolus vulgaris HOM05D002084 ORTHO05D002031 1.5e-08 63.2 100 43.0
Glyma.13G122100 Glycine max HOM05D002084 ORTHO05D002031 2.0e-08 62.8 61 55.7
HanXRQChr15g0467931 Helianthus annuus HOM05D002084 ORTHO05D002031 2.0e-08 62.8 93 38.7
Lsat_1_v5_gn_9_10441 Lactuca sativa HOM05D002084 ORTHO05D002031 2.6e-08 62.4 58 55.2
Lsat_1_v5_gn_9_8740 Lactuca sativa HOM05D002084 ORTHO05D002031 2.6e-08 62.4 58 55.2
SEGI_38270 Sequoiadendron giganteum HOM05D002084 ORTHO05D002031 9.9e-08 60.5 51 52.9
MD05G1199700 Malus domestica HOM05D002084 ORTHO05D002031 1.7e-07 59.7 60 46.7
MELO3C012906.2 Cucumis melo HOM05D002084 ORTHO05D002031 2.2e-07 59.3 58 51.7
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.2e-07 59.3 44 63.6
unitig_0.g777 Utricularia gibba HOM05D002084 ORTHO05D002031 2.2e-07 59.3 89 37.1
SEGI_27913 Sequoiadendron giganteum HOM05D002084 ORTHO05D002031 2.9e-07 58.9 51 51.0
Glyma.10G035700 Glycine max HOM05D002084 ORTHO05D002031 4.9e-07 58.2 92 41.3
HPP92_007157 Vanilla planifolia HOM05D002084 ORTHO05D002031 6.4e-07 57.8 59 44.1
Prupe.8G225500 Prunus persica HOM05D002084 ORTHO05D002031 8.4e-07 57.4 60 45.0
Psat6g055280 Pisum sativum HOM05D002084 ORTHO05D002031 1.1e-06 57.0 77 44.2
ATR0680G370 Amborella trichopoda HOM05D002084 ORTHO05D002031 7.1e-06 54.3 63 42.9
CDE02G0592 Ceratophyllum demersum HOM05D002084 ORTHO05D002031 7.1e-06 54.3 58 43.1
Mapoly0095s0052 Marchantia polymorpha HOM05D002084 ORTHO05D002031 9.3e-06 53.9 60 38.3


User provided reference genes

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