Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.3e-257 892.9 514 100.0
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 8.6e-206 720.7 515 77.3
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.5e-199 698.7 517 77.2
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.3e-198 696.0 513 77.8
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.8e-194 681.4 515 72.6
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 8.3e-193 677.6 517 73.3
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.1e-192 675.2 515 72.2
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.6e-191 673.3 508 73.6
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 4.6e-191 671.8 510 73.1
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.6e-191 671.8 506 72.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.8e-191 671.0 515 71.5
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.7e-190 669.8 513 77.8
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.3e-190 669.5 506 72.1
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.6e-190 667.9 523 74.4
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 1.5e-189 666.8 506 72.1
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.9e-189 666.4 513 74.3
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 3.3e-189 665.6 506 72.5
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.1e-188 661.0 510 72.0
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.9e-187 657.5 510 71.6
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.6e-186 656.0 515 70.9
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 3.4e-186 655.6 512 74.6
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 5.8e-186 654.8 511 70.6
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 5.8e-186 654.8 516 75.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 7.6e-186 654.4 507 72.8
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 9.9e-186 654.1 514 73.2
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 1.7e-185 653.3 516 70.3
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.7e-185 653.3 514 72.8
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 4.9e-185 651.7 514 73.2
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.4e-184 650.2 506 69.2
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.4e-184 650.2 514 68.3
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 4.1e-184 648.7 513 69.8
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.2e-184 647.5 517 69.1
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.6e-183 646.7 516 70.5
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.6e-183 646.7 516 69.4
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 4.6e-183 645.2 506 69.4
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 6.0e-183 644.8 514 72.4
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 7.8e-183 644.4 508 68.3
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.3e-182 643.7 512 69.3
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.3e-182 643.7 516 68.8
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.0e-182 642.5 512 72.7
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 3.9e-182 642.1 516 73.4
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 6.6e-182 641.3 508 70.5
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 6.6e-182 641.3 511 69.5
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 1.1e-181 640.6 516 68.6
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.1e-181 640.6 514 69.5
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.5e-181 640.2 512 72.5
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 4.3e-181 638.6 516 72.5
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 5.6e-181 638.3 512 68.8
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.3e-181 637.9 511 69.5
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 9.6e-181 637.5 514 70.8
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 1.6e-180 636.7 516 68.6
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.8e-180 636.0 512 71.9
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 3.6e-180 635.6 508 69.7
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.7e-180 635.2 513 72.5
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 6.2e-180 634.8 513 71.7
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 6.2e-180 634.8 512 72.5
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 8.1e-180 634.4 509 72.3
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.4e-179 633.6 506 68.0
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 2.4e-179 632.9 512 72.1
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 6.8e-179 631.3 505 72.1
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.2e-178 630.6 512 67.8
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.5e-178 630.2 509 70.7
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 2.0e-178 629.8 512 71.1
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.0e-178 629.8 512 68.2
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.6e-178 629.4 507 68.4
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.3e-177 627.1 517 70.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.3e-177 627.1 517 70.8
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 6.4e-177 624.8 588 64.6
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 2.4e-176 622.9 514 68.1
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.2e-176 622.5 517 71.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 5.4e-176 621.7 509 69.4
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 5.4e-176 621.7 508 71.7
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.1e-176 621.3 509 70.7
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 7.1e-176 621.3 517 71.2
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 2.1e-175 619.8 514 68.1
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 7.8e-175 617.8 507 67.5
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.3e-174 617.1 517 70.0
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.7e-174 616.7 513 67.1
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 5.1e-174 615.1 485 68.9
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-173 614.0 509 70.1
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 3.3e-173 612.5 511 71.0
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.1e-172 609.8 506 66.2
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 2.8e-172 609.4 512 66.8
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.6e-172 609.0 512 65.2
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 3.6e-172 609.0 512 70.5
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 6.2e-172 608.2 512 72.1
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.8e-171 606.7 525 64.6
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.1e-171 605.9 514 65.4
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 6.9e-171 604.7 510 65.1
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.2e-170 604.0 512 65.0
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.5e-170 603.6 516 65.1
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 2.6e-170 602.8 497 69.6
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 9.9e-170 600.9 514 65.2
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-169 600.5 513 69.6
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.7e-169 600.1 513 65.5
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 5.4e-168 595.1 513 65.3
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 5.4e-168 595.1 513 65.3
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 5.4e-168 595.1 513 65.3
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.6e-167 593.6 517 66.0
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 5.1e-166 588.6 508 71.1
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 5.6e-165 585.1 514 65.0
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 9.6e-165 584.3 517 63.2
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.3e-164 583.9 512 67.6
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.4e-163 579.7 518 69.1
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 7.6e-162 574.7 516 67.2
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 9.9e-162 574.3 511 62.4
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.3e-158 563.9 513 62.6
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.6e-156 557.0 406 71.9
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.2e-154 550.8 513 59.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 2.6e-154 549.7 445 66.5
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.8e-154 548.5 507 63.3
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 5.8e-146 521.9 426 69.7
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 5.5e-144 515.4 421 74.1
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 3.5e-143 512.7 512 57.2
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 9.7e-141 504.6 414 73.9
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 6.3e-140 501.9 506 55.5
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.5e-138 497.3 512 55.7
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 4.5e-138 495.7 511 58.9
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.5e-133 480.7 362 71.3
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 2.5e-133 479.9 503 56.5
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.7e-133 478.8 408 67.4
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 9.1e-131 471.5 603 49.8
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 2.9e-129 466.5 457 58.4
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 6.3e-124 448.7 522 51.7
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 5.3e-115 419.1 522 46.7
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-114 417.2 328 73.2
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 1.7e-105 387.5 522 43.5
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 6.5e-105 385.6 533 45.4
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-99 367.9 333 60.4
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.1e-99 366.3 290 72.1
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.0e-93 347.4 321 67.6
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 7.0e-91 339.0 515 41.9
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.6e-82 311.2 318 55.3
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 8.1e-71 272.3 267 56.2
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 2.6e-69 267.3 329 52.6
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 7.8e-66 255.8 222 58.6
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 7.8e-58 229.2 211 58.8
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 2.5e-56 224.2 172 73.3
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.2e-55 219.5 188 62.8
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.0e-49 202.2 536 34.1
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.1e-48 198.7 151 71.5
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.6e-47 193.7 168 68.5
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 8.1e-47 192.6 151 66.9
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.1e-46 192.2 558 32.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.0e-45 188.0 151 66.2
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 4.5e-45 186.8 593 31.0
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 7.4e-40 169.5 127 69.3
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.5e-37 160.2 136 64.7
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 3.9e-33 147.1 150 58.0
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 4.1e-30 137.1 92 77.2
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 4.1e-30 137.1 92 77.2
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 4.1e-30 137.1 92 77.2
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.0e-28 132.5 92 76.1
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.3e-28 132.1 91 73.6
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.7e-28 131.7 92 71.7
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 3.2e-27 127.5 92 72.8
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.9e-26 122.9 88 71.6
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.8e-23 113.6 101 60.4
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 1.2e-21 109.0 90 58.9
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-20 105.5 96 61.5
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.7e-16 89.4 62 74.2
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-15 89.0 60 76.7
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 8.2e-15 86.3 151 39.1
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 3.1e-14 84.3 62 67.7
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 6.9e-14 83.2 120 45.0
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 4.5e-13 80.5 82 52.4
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 8.5e-12 76.3 61 60.7
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.9e-11 75.1 59 69.5
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 1.8e-09 68.6 59 62.7
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 2.4e-06 58.2 48 64.6


User provided reference genes

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