Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0007240 Simmondsia chinensis HOM05D002001 ORTHO05D006833 1.0e-139 500.0 243 100.0
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 3.5e-71 272.3 249 52.2
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 4.6e-71 271.9 242 52.9
CSS0024108 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 1.8e-70 270.0 248 52.4
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 2.3e-70 269.6 250 52.0
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 1.9e-69 266.5 239 54.4
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 2.5e-69 266.2 242 51.7
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 3.7e-68 262.3 242 53.3
FAN12G2518 Fragaria x ananassa HOM05D001103 ORTHO05D006833 3.7e-68 262.3 244 54.9
FAN22G0254 Fragaria x ananassa HOM05D001103 ORTHO05D006833 3.7e-68 262.3 244 54.9
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 3.7e-68 262.3 245 51.0
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 4.8e-68 261.9 247 50.6
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.8e-68 261.9 245 51.0
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 1.1e-67 260.8 244 54.5
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 1.4e-67 260.4 245 50.6
TWI74G1639 Tripterygium wilfordii HOM05D002001 ORTHO05D006833 1.2e-66 257.3 250 50.8
Prupe.1G333600 Prunus persica HOM05D002001 ORTHO05D006833 3.4e-66 255.8 246 50.4
GSVIVG01011657001 Vitis vinifera HOM05D002001 ORTHO05D006833 4.5e-66 255.4 239 51.5
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 1.7e-65 253.4 247 50.6
Actinidia36625 Actinidia chinensis HOM05D002001 ORTHO05D006833 2.2e-65 253.1 241 50.6
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 2.2e-65 253.1 296 44.3
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 2.9e-65 252.7 260 46.5
MD16G1018300 Malus domestica HOM05D002001 ORTHO05D006833 1.9e-64 250.0 256 48.4
Lj6A737G49 Lonicera japonica HOM05D002001 ORTHO05D006833 2.7e-63 246.1 242 50.8
Hma1.2p1_0277F.1_g111670 Hydrangea macrophylla HOM05D002001 ORTHO05D006833 3.6e-63 245.7 239 51.0
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 3.6e-63 245.7 240 50.8
Nitab4.5_0002803g0040 Nicotiana tabacum HOM05D002001 ORTHO05D006833 6.1e-63 245.0 252 50.0
Atru.chr11.917 Acer truncatum HOM05D002001 ORTHO05D006833 2.3e-62 243.0 254 47.6
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 8.8e-62 241.1 247 49.8
Cpa.g.sc2.191 Carica papaya HOM05D002001 ORTHO05D006833 4.3e-61 238.8 250 48.8
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 3.7e-60 235.7 250 48.0
Oeu062634.1 Olea europaea HOM05D002001 ORTHO05D006833 4.8e-60 235.3 249 46.2
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 6.3e-60 235.0 250 47.2
Lsat_1_v5_gn_3_53521 Lactuca sativa HOM05D002001 ORTHO05D006833 1.4e-59 233.8 244 48.0
DCAR_026803 Daucus carota HOM05D002001 ORTHO05D006833 3.1e-59 232.6 251 46.6
CANSAT01G0386 Cannabis sativa HOM05D002001 ORTHO05D006833 5.3e-59 231.9 240 46.7
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 5.3e-59 231.9 234 49.6
vmacro10695 Vaccinium macrocarpon HOM05D002001 ORTHO05D006833 2.0e-58 229.9 242 48.3
Oeu062636.1 Olea europaea HOM05D002001 ORTHO05D006833 1.0e-57 227.6 238 47.1
Potri.010G106200 Populus trichocarpa HOM05D002001 ORTHO05D006833 1.3e-57 227.3 245 46.1
Eucgr.G02104 Eucalyptus grandis HOM05D002001 ORTHO05D006833 2.2e-57 226.5 248 46.0
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 2.2e-57 226.5 246 45.5
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 5.0e-57 225.3 241 43.6
ClCG09G016760 Citrullus lanatus HOM05D002001 ORTHO05D006833 3.6e-55 219.2 276 42.8
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 6.1e-55 218.4 250 46.0
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 6.1e-55 218.4 280 43.2
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 1.5e-53 213.8 277 43.0
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 2.6e-53 213.0 252 44.8
PGSC0003DMG400029468 Solanum tuberosum HOM05D002001 ORTHO05D006833 2.6e-53 213.0 250 44.8
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 3.3e-53 212.6 252 44.8
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 7.4e-53 211.5 250 44.4
Sed0002570 Sechium edule HOM05D002001 ORTHO05D006833 7.4e-53 211.5 276 43.1
ECA246G3445 Erigeron canadensis HOM05D002001 ORTHO05D006833 1.8e-51 206.8 246 43.5
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 1.3e-49 200.7 245 43.3
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 1.5e-48 197.2 280 37.5
SHI04310 Sapria himalayana HOM05D002001 ORTHO05D006833 1.5e-48 197.2 248 42.3
HanXRQChr17g0534331 Helianthus annuus HOM05D002001 ORTHO05D006833 1.2e-47 194.1 237 41.8
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 8.8e-46 188.0 235 41.7
Thhalv10005303m.g Eutrema salsugineum HOM05D002001 ORTHO05D006833 1.5e-45 187.2 235 39.1
AT2G01730 Arabidopsis thaliana HOM05D002001 ORTHO05D006833 2.6e-45 186.4 235 40.9
MSTRG.8103 Avicennia marina HOM05D002001 ORTHO05D006833 2.6e-45 186.4 240 40.4
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 9.7e-45 184.5 235 42.6
CARHR144290 Cardamine hirsuta HOM05D002001 ORTHO05D006833 1.7e-44 183.7 235 40.4
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 1.7e-44 183.7 278 37.4
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 2.2e-44 183.3 236 39.4
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 3.7e-44 182.6 235 40.4
Nn4g24387 Nelumbo nucifera HOM05D002001 ORTHO05D006833 6.3e-44 181.8 259 38.2
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 8.2e-44 181.4 237 38.4
BcaB07g30376 Brassica carinata HOM05D002001 ORTHO05D006833 4.1e-43 179.1 235 39.1
A02p32290 Brassica napus HOM05D002001 ORTHO05D006833 2.9e-41 172.9 236 37.7
BraA02t08246Z Brassica rapa HOM05D002001 ORTHO05D006833 2.9e-41 172.9 236 37.7
HPP92_024776 Vanilla planifolia HOM05D001290 ORTHO05D006833 6.5e-41 171.8 245 39.6
BcaC03g17071 Brassica carinata HOM05D002001 ORTHO05D006833 3.2e-40 169.5 236 37.3
C02p49890 Brassica napus HOM05D002001 ORTHO05D006833 3.2e-40 169.5 236 37.3
BolC2t11068H Brassica oleracea HOM05D002001 ORTHO05D006833 3.2e-40 169.5 236 37.3
Hund02009 Selenicereus undatus HOM05D002001 ORTHO05D006833 5.2e-38 162.2 127 63.8
Hund02008 Selenicereus undatus HOM05D002001 ORTHO05D006833 3.4e-37 159.5 123 65.0
Dinv10473 Davidia involucrata HOM05D002001 ORTHO05D006833 4.4e-37 159.1 135 57.8
Ca_12539_v3 Cicer arietinum L. HOM05D002001 ORTHO05D006833 1.3e-36 157.5 134 57.5
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 1.3e-36 157.5 133 59.4
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 2.8e-36 156.4 133 58.6
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 3.7e-36 156.0 134 56.7
Aqoxy1G03746 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 8.3e-36 154.8 137 54.0
Aqoxy3G02830 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 3.1e-35 152.9 137 53.3
CDE04G3481 Ceratophyllum demersum HOM05D002001 ORTHO05D006833 1.6e-34 150.6 142 51.4
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 2.7e-34 149.8 122 62.3
AUR62030423 Chenopodium quinoa HOM05D002001 ORTHO05D006833 7.7e-34 148.3 122 61.5
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 1.7e-33 147.1 122 61.5
Lalb_Chr10g0095701 Lupinus albus HOM05D002001 ORTHO05D006833 2.9e-33 146.4 128 56.2
Psat6g046600 Pisum sativum HOM05D002001 ORTHO05D006833 2.9e-33 146.4 133 54.1
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 6.5e-33 145.2 133 54.9
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 3.0e-30 136.3 136 50.7
Lj5g0002389 Lotus japonicus HOM05D002001 ORTHO05D006833 1.5e-29 134.0 168 45.8
Lj2g0009645 Lotus japonicus HOM05D002001 ORTHO05D006833 4.4e-29 132.5 168 45.2
Lj1g0014242 Lotus japonicus HOM05D002001 ORTHO05D006833 9.8e-29 131.3 168 45.2
arahy.Tifrunner.gnm1.ann1.0HZN60 Arachis hypogaea HOM05D002001 ORTHO05D006833 1.1e-27 127.9 133 48.1
arahy.Tifrunner.gnm1.ann1.DJZM3B Arachis hypogaea HOM05D002001 ORTHO05D006833 3.1e-27 126.3 133 48.1
SEGI_18225 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 4.1e-27 125.9 153 42.5
SEGI_40984 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 4.1e-27 125.9 153 42.5
ATR0753G129 Amborella trichopoda HOM05D002001 ORTHO05D006833 1.6e-26 124.0 328 27.4
Os09g0397900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D006833 1.0e-22 111.3 136 45.6
Actinidia12396 Actinidia chinensis HOM05D002001 ORTHO05D006833 1.8e-19 100.5 117 45.3
Mapoly0023s0072 Marchantia polymorpha HOM05D002001 ORTHO05D006833 1.8e-19 100.5 147 38.1
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 4.5e-18 95.9 155 32.9
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 1.3e-17 94.4 167 31.7
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 3.1e-14 83.2 137 35.0
Hund24272 Selenicereus undatus HOM05D002001 ORTHO05D006833 6.4e-12 75.5 44 79.5
RcHm_v2.0_Chr2g0101461 Rosa chinensis HOM05D002001 ORTHO05D006833 7.8e-10 68.6 64 54.7
RcHm_v2.0_Chr6g0263901 Rosa chinensis HOM05D002001 ORTHO05D006833 1.0e-09 68.2 86 44.2
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 1.9e-08 63.9 175 29.7
CBR_g20441 Chara braunii HOM05D002001 ORTHO05D006833 1.2e-07 61.2 176 26.1
unitig_46.g18398 Utricularia gibba HOM05D002001 ORTHO05D006833 5.2e-06 55.8 80 45.0


User provided reference genes

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