Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 2.5e-98 362.5 232 100.0
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 8.9e-88 327.4 233 80.3
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.3e-86 323.6 235 80.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.4e-85 318.2 233 78.1
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.4e-85 318.2 233 78.1
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.2e-84 317.0 233 74.2
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.0e-84 316.2 233 79.4
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.0e-84 316.2 236 80.1
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 7.8e-84 314.3 233 79.4
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 5.0e-83 311.6 233 73.0
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 6.6e-83 311.2 233 81.5
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.5e-82 310.1 233 88.4
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.5e-82 310.1 232 79.3
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 1.5e-82 310.1 233 79.8
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.5e-82 310.1 232 82.8
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.5e-82 309.3 232 81.9
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 3.3e-82 308.9 232 82.8
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 3.3e-82 308.9 233 86.3
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 4.3e-82 308.5 232 79.7
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 5.6e-82 308.1 233 78.1
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 9.5e-82 307.4 233 78.1
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.2e-81 307.0 233 77.3
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 1.2e-81 307.0 233 88.4
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.6e-81 306.6 234 88.0
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.6e-81 306.6 234 88.0
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.1e-81 306.2 233 80.7
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 2.1e-81 306.2 233 76.0
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 2.8e-81 305.8 233 72.1
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 2.8e-81 305.8 232 78.4
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 2.8e-81 305.8 232 79.7
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.8e-81 305.8 232 80.6
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 4.7e-81 305.1 233 77.3
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 4.7e-81 305.1 233 80.7
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 6.2e-81 304.7 233 79.4
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 6.2e-81 304.7 233 79.4
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 6.2e-81 304.7 233 74.7
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 8.0e-81 304.3 234 72.2
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 8.0e-81 304.3 233 75.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.1e-80 303.9 232 76.7
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.4e-80 303.5 248 72.2
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 3.1e-80 302.4 244 75.8
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 3.1e-80 302.4 233 77.7
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 4.0e-80 302.0 233 85.8
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 6.8e-80 301.2 233 79.4
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 8.9e-80 300.8 234 79.1
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.5e-79 300.1 233 79.4
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 2.0e-79 299.7 233 78.5
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 2.0e-79 299.7 234 74.4
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 5.8e-79 298.1 233 78.1
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 5.8e-79 298.1 233 76.0
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 9.8e-79 297.4 233 78.1
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.3e-78 297.0 233 75.5
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.3e-78 297.0 233 78.5
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 2.9e-78 295.8 233 73.8
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 2.9e-78 295.8 233 74.7
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 3.7e-78 295.4 233 75.1
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.7e-78 295.4 234 71.4
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 3.7e-78 295.4 233 75.5
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 4.9e-78 295.0 233 73.8
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 4.9e-78 295.0 233 73.8
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 6.4e-78 294.7 233 78.5
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 6.4e-78 294.7 233 75.1
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 8.3e-78 294.3 233 73.8
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.1e-77 293.9 233 73.8
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.4e-77 293.5 233 73.4
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.4e-77 293.5 233 74.2
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.9e-77 293.1 232 69.0
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.9e-77 293.1 236 78.0
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 2.4e-77 292.7 233 77.3
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 4.1e-77 292.0 233 73.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 5.4e-77 291.6 233 73.0
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 7.0e-77 291.2 233 72.5
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.2e-76 290.4 232 70.3
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.6e-76 290.0 233 72.5
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-76 290.0 233 72.5
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.6e-76 290.0 233 72.5
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.0e-76 289.7 232 74.1
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.0e-76 289.7 233 78.1
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.5e-76 288.9 237 74.3
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 6.0e-76 288.1 231 73.2
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 7.8e-76 287.7 232 73.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.3e-75 287.0 233 72.1
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.3e-75 287.0 232 73.7
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.7e-75 286.6 233 76.8
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 2.3e-75 286.2 233 82.8
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.0e-75 285.8 233 73.4
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 3.0e-75 285.8 233 71.7
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 8.6e-75 284.3 233 73.4
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.6e-75 284.3 233 73.4
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-74 283.5 233 71.2
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.5e-74 283.5 233 71.2
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.9e-74 283.1 234 72.2
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.9e-74 283.1 234 72.2
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.9e-74 283.1 232 78.0
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 2.5e-74 282.7 233 71.2
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 2.5e-74 282.7 233 70.8
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 2.5e-74 282.7 233 82.8
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 2.5e-74 282.7 232 73.3
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.5e-74 282.7 232 76.3
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.3e-74 282.3 236 73.7
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 3.3e-74 282.3 233 76.8
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 4.3e-74 282.0 233 71.2
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 4.3e-74 282.0 233 71.2
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 5.6e-74 281.6 236 75.4
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 5.6e-74 281.6 238 79.4
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.2e-73 280.4 236 73.7
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 2.1e-73 279.6 232 78.0
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 2.1e-73 279.6 233 75.5
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 2.8e-73 279.3 235 71.9
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.4e-72 276.9 232 68.1
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 3.1e-72 275.8 239 74.1
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.8e-72 274.6 232 72.4
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.0e-71 273.1 232 82.3
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 5.8e-71 271.6 232 76.3
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.9e-71 270.8 232 82.3
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-70 270.4 232 81.9
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.7e-70 270.0 232 81.9
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.2e-70 269.6 233 79.0
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 2.9e-70 269.2 228 76.3
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 8.3e-70 267.7 271 72.0
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-69 267.3 232 81.0
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.9e-69 266.5 234 70.1
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 4.1e-69 265.4 232 69.4
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 9.2e-69 264.2 253 61.7
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 2.1e-68 263.1 233 73.4
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.6e-68 261.9 287 56.1
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.1e-66 257.3 233 79.8
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.5e-66 256.9 233 77.7
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 4.3e-66 255.4 236 66.5
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 5.6e-66 255.0 233 67.0
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 7.3e-66 254.6 233 79.0
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 7.3e-66 254.6 233 67.0
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 7.3e-66 254.6 236 64.0
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 8.9e-64 247.7 232 65.5
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.4e-63 245.7 220 71.8
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 7.1e-61 238.0 232 63.4
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 8.1e-57 224.6 232 60.8
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.9e-54 215.3 255 67.5
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.1e-49 199.9 188 69.1
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.8e-49 198.7 121 85.1
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 4.0e-48 195.7 123 83.7
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 9.0e-48 194.5 235 59.1
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 2.0e-47 193.4 192 65.1
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 3.8e-46 189.1 122 81.1
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 4.9e-46 188.7 119 82.4
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.4e-46 188.0 121 80.2
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-45 187.6 189 70.4
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 4.2e-45 185.7 236 55.1
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.7e-43 177.9 112 82.1
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-42 177.6 112 82.1
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-41 173.7 112 80.4
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 2.4e-40 169.9 235 51.9
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 5.3e-40 168.7 122 74.6
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 6.4e-38 161.8 242 47.1
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 3.1e-32 142.9 153 68.6
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.1e-29 134.4 72 93.1
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 2.5e-29 133.3 72 91.7
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.1e-29 131.7 72 91.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 9.3e-29 131.3 72 90.3
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 6.0e-28 128.6 72 84.7
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.3e-27 127.5 140 63.6
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 4.8e-25 119.0 71 81.7
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.6e-23 113.2 181 58.0
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 4.5e-23 112.5 72 73.6
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 2.1e-20 103.6 229 36.2
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 7.9e-20 101.7 180 46.7
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 3.0e-19 99.8 69 73.9
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 5.1e-19 99.0 75 78.7
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 9.7e-18 94.7 63 73.0
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 6.3e-17 92.0 235 37.4
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 7.7e-15 85.1 44 88.6
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.3e-14 84.3 56 73.2
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.9e-12 75.1 96 54.2
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-10 70.9 89 52.8
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 5.9e-07 58.9 47 61.7
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 1.3e-06 57.8 78 55.1
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 8.5e-06 55.1 55 47.3


User provided reference genes

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