Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 6.9e-181 637.1 304 100.0
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.2e-121 440.3 292 70.9
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.2e-121 440.3 302 68.9
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 4.7e-97 358.6 304 56.2
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 2.6e-95 352.8 304 57.9
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 4.4e-95 352.1 304 57.6
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 1.1e-93 347.4 303 57.1
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.9e-93 346.7 281 58.4
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.4e-93 346.3 302 55.3
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 2.4e-93 346.3 303 56.1
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 3.2e-93 345.9 305 55.7
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 4.1e-93 345.5 313 55.6
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-92 344.0 310 53.9
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-92 344.0 310 53.9
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-92 344.0 310 53.9
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 2.7e-92 342.8 309 54.0
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 6.0e-92 341.7 304 54.6
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 6.0e-92 341.7 304 54.6
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 6.0e-92 341.7 304 54.6
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.7e-91 340.1 298 55.7
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.7e-91 340.1 306 54.2
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 3.9e-91 339.0 308 56.5
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.6e-91 338.2 300 55.7
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 8.6e-91 337.8 297 54.9
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 8.6e-91 337.8 312 55.4
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 8.6e-91 337.8 271 56.5
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.1e-90 337.4 297 54.5
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.5e-90 337.0 296 53.7
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 1.9e-90 336.7 311 53.1
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.9e-90 336.7 275 57.8
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.9e-90 336.7 323 52.6
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 2.5e-90 336.3 309 52.4
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 7.3e-90 334.7 307 55.7
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 7.3e-90 334.7 300 55.3
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 9.5e-90 334.3 306 55.6
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 1.2e-89 334.0 310 53.2
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 1.6e-89 333.6 310 52.6
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.1e-89 333.2 299 53.8
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.8e-89 332.8 310 52.3
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 2.8e-89 332.8 303 54.5
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 3.6e-89 332.4 311 53.4
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 6.2e-89 331.6 309 51.1
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.2e-89 331.6 298 56.0
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 6.2e-89 331.6 304 51.6
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.4e-88 330.5 309 52.4
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 1.4e-88 330.5 306 51.0
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.8e-88 330.1 301 55.1
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.8e-88 330.1 301 55.1
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.8e-88 330.1 310 51.9
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 2.3e-88 329.7 301 52.8
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 3.1e-88 329.3 311 52.4
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 5.2e-88 328.6 301 53.2
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.8e-88 328.2 283 55.1
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 1.2e-87 327.4 276 55.4
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 1.5e-87 327.0 307 54.1
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.0e-87 326.6 298 54.0
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.0e-87 326.6 310 53.9
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 2.6e-87 326.2 302 52.6
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 5.8e-87 325.1 309 53.4
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 5.8e-87 325.1 292 54.5
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 9.8e-87 324.3 305 51.8
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 1.7e-86 323.6 293 52.6
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 1.7e-86 323.6 318 50.6
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 6.4e-86 321.6 289 54.0
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 8.3e-86 321.2 282 54.3
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.9e-85 320.1 298 51.7
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 2.4e-85 319.7 310 51.3
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 2.4e-85 319.7 300 50.7
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 4.1e-85 318.9 314 50.3
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 5.4e-85 318.5 313 51.4
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 7.1e-85 318.2 282 53.5
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 7.1e-85 318.2 256 58.6
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 9.2e-85 317.8 290 51.7
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 1.6e-84 317.0 309 51.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 2.7e-84 316.2 276 54.7
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 6.0e-84 315.1 295 52.2
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.0e-83 314.3 308 49.7
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 1.0e-83 314.3 296 51.4
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.3e-83 313.9 280 52.1
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 2.3e-83 313.2 272 54.0
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 2.3e-83 313.2 230 60.0
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 3.0e-83 312.8 313 49.5
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.9e-83 312.4 306 51.0
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 5.1e-83 312.0 273 53.5
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 8.6e-83 311.2 234 60.3
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 3.3e-82 309.3 231 57.6
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 5.6e-82 308.5 295 51.2
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.1e-81 306.6 290 50.3
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 2.1e-81 306.6 267 53.9
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 2.1e-81 306.6 279 53.8
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.8e-81 306.2 297 49.5
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 6.2e-81 305.1 327 47.7
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 6.2e-81 305.1 295 50.8
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.1e-81 304.7 274 52.6
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.1e-80 304.3 232 58.6
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.8e-80 303.5 293 48.8
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 5.2e-80 302.0 298 48.3
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 6.8e-80 301.6 268 51.5
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 8.9e-80 301.2 242 56.2
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 8.9e-80 301.2 264 52.3
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.2e-79 300.8 293 49.5
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 2.0e-79 300.1 229 59.0
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 2.6e-79 299.7 299 49.5
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 2.9e-78 296.2 228 58.8
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 8.3e-78 294.7 270 51.1
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 1.4e-77 293.9 295 49.2
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 1.4e-77 293.9 274 51.8
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.4e-77 293.1 295 48.1
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 2.4e-77 293.1 275 52.0
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 9.2e-77 291.2 278 52.9
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 9.2e-77 291.2 246 55.3
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 1.2e-76 290.8 295 49.5
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.6e-76 290.4 295 49.5
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 1.6e-76 290.4 295 49.5
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 1.6e-76 290.4 295 49.5
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 2.7e-76 289.7 226 55.3
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.7e-76 289.7 219 60.3
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.7e-76 289.7 247 54.3
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 7.8e-76 288.1 230 57.4
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 1.0e-75 287.7 228 57.5
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 3.0e-75 286.2 245 55.1
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 3.9e-75 285.8 295 48.8
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 5.1e-75 285.4 236 54.7
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 5.1e-75 285.4 291 48.8
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.5e-74 283.9 272 51.5
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 4.3e-74 282.3 269 48.3
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 5.6e-74 282.0 269 49.1
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-73 280.0 295 48.1
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-73 280.0 277 46.9
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 2.1e-73 280.0 291 48.1
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 6.2e-73 278.5 278 47.1
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 3.1e-72 276.2 277 46.2
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 3.4e-71 272.7 193 63.2
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 2.4e-69 266.5 230 53.0
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 2.7e-68 263.1 228 51.8
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 1.5e-66 257.3 210 56.7
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 9.6e-66 254.6 235 51.1
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.3e-62 244.2 194 57.7
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.2e-61 239.6 303 43.6
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 4.2e-61 239.2 217 50.2
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 1.6e-60 237.3 199 55.8
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 1.1e-58 231.1 219 49.3
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 3.3e-58 229.6 195 54.9
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 2.8e-57 226.5 239 46.0
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 8.1e-57 224.9 233 47.6
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 1.8e-56 223.8 237 46.0
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 2.0e-55 220.3 228 43.9
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 4.9e-54 215.7 154 61.7
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 2.4e-53 213.4 227 44.9
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 2.4e-53 213.4 259 44.4
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 7.1e-53 211.8 220 44.5
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.6e-52 210.7 219 44.7
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 1.6e-52 210.7 217 44.7
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 2.7e-52 209.9 231 44.6
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 1.8e-51 207.2 232 44.0
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 8.7e-51 204.9 264 43.9
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 1.1e-50 204.5 249 39.8
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 4.8e-49 199.1 282 41.1
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.4e-48 197.6 177 55.4
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.4e-48 196.8 227 43.6
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 4.5e-47 192.6 182 48.4
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.0e-46 191.4 156 58.3
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 2.9e-46 189.9 150 52.7
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 6.5e-46 188.7 234 42.3
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 3.0e-43 179.9 153 55.6
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 4.3e-42 176.0 240 39.6
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 1.2e-39 167.9 192 43.2
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 5.0e-38 162.5 304 33.6
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.5e-37 160.2 210 37.1
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.3e-35 153.7 128 53.9
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.8e-30 136.3 108 55.6
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.0e-27 128.3 94 58.5
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-25 120.9 85 60.0
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 2.0e-23 114.0 92 57.6
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 1.5e-13 81.3 49 69.4
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 7.2e-13 79.0 110 40.9
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 5.9e-07 59.3 41 58.5
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 2.9e-06 57.0 50 52.0


User provided reference genes

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