Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007710 Simmondsia chinensis HOM05D003098 ORTHO05D003634 1.3e-153 546.6 317 100.0
AUR62041781 Chenopodium quinoa HOM05D003098 ORTHO05D003634 1.2e-47 194.5 359 42.9
Ah.04g163840 Amaranthus hybridus HOM05D003098 ORTHO05D003634 2.3e-46 190.3 403 40.4
AUR62037970 Chenopodium quinoa HOM05D003098 ORTHO05D003634 3.0e-46 189.9 384 42.2
Atru.chr2.1895 Acer truncatum HOM05D003098 ORTHO05D003634 7.0e-43 178.7 331 43.2
Duzib268G0819 Durio zibethinus HOM05D003098 ORTHO05D003634 2.0e-42 177.2 332 44.3
Actinidia12840 Actinidia chinensis HOM05D003098 ORTHO05D003634 3.5e-42 176.4 339 43.7
EL10Ac4g08489 Beta vulgaris HOM05D003098 ORTHO05D003634 4.5e-42 176.0 407 38.8
Dinv13310 Davidia involucrata HOM05D003098 ORTHO05D003634 5.9e-42 175.6 336 45.5
Gohir.A13G152100 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.0e-41 174.9 335 41.5
Eucgr.F03204 Eucalyptus grandis HOM05D003098 ORTHO05D003634 2.2e-41 173.7 344 43.0
TWI38G0376 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 2.2e-41 173.7 334 41.6
TWI38G1646 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 2.2e-41 173.7 334 41.6
Medtr2g070630 Medicago truncatula HOM05D003098 ORTHO05D003634 6.5e-41 172.2 336 43.8
Solyc07g056630.3 Solanum lycopersicum HOM05D003098 ORTHO05D003634 6.5e-41 172.2 338 40.5
CAN.G1003.6 Capsicum annuum HOM05D003098 ORTHO05D003634 1.5e-40 171.0 339 41.0
Ciclev10020251m.g Citrus clementina HOM05D003098 ORTHO05D003634 1.5e-40 171.0 333 45.3
Phvul.005G060550 Phaseolus vulgaris HOM05D003098 ORTHO05D003634 2.5e-40 170.2 333 42.0
CiPaw.11G068300 Carya illinoinensis HOM05D003098 ORTHO05D003634 5.5e-40 169.1 346 44.2
Sopen07g029980 Solanum pennellii HOM05D003098 ORTHO05D003634 5.5e-40 169.1 338 40.5
Psat1g001120 Pisum sativum HOM05D003098 ORTHO05D003634 7.2e-40 168.7 333 43.5
GSVIVG01038087001 Vitis vinifera HOM05D003098 ORTHO05D003634 9.4e-40 168.3 328 41.8
Glyma.13G259100 Glycine max HOM05D003098 ORTHO05D003634 1.2e-39 167.9 345 42.3
Rhsim06G0184800 Rhododendron simsii HOM05D003098 ORTHO05D003634 1.2e-39 167.9 339 42.5
Manes.15G101000 Manihot esculenta HOM05D003098 ORTHO05D003634 1.6e-39 167.5 340 42.4
Cc05_g10240 Coffea canephora HOM05D003098 ORTHO05D003634 2.7e-39 166.8 334 41.0
Potri.001G378000 Populus trichocarpa HOM05D003098 ORTHO05D003634 2.7e-39 166.8 341 43.4
TAR627G0095 Trochodendron aralioides HOM05D003098 ORTHO05D003634 4.7e-39 166.0 336 40.8
Thecc.07G146500 Theobroma cacao HOM05D003098 ORTHO05D003634 8.0e-39 165.2 337 41.5
Ca_03391_v3 Cicer arietinum L. HOM05D003098 ORTHO05D003634 1.0e-38 164.9 347 39.8
CANSAT94G0015 Cannabis sativa HOM05D003098 ORTHO05D003634 1.8e-38 164.1 333 40.8
Glyma.15G249000 Glycine max HOM05D003098 ORTHO05D003634 5.2e-38 162.5 337 42.4
Lalb_Chr01g0016081 Lupinus albus HOM05D003098 ORTHO05D003634 6.7e-38 162.2 349 40.4
TAR629G0752 Trochodendron aralioides HOM05D003098 ORTHO05D003634 8.8e-38 161.8 330 40.3
Cpa.g.sc77.97 Carica papaya HOM05D003098 ORTHO05D003634 1.2e-37 161.4 337 42.1
Nitab4.5_0005080g0040 Nicotiana tabacum HOM05D003098 ORTHO05D003634 1.5e-37 161.0 346 39.6
Hund02321 Selenicereus undatus HOM05D003098 ORTHO05D003634 1.5e-37 161.0 430 40.5
arahy.Tifrunner.gnm1.ann1.PZE2NF Arachis hypogaea HOM05D003098 ORTHO05D003634 2.6e-37 160.2 347 42.1
Duzib213G0182 Durio zibethinus HOM05D003098 ORTHO05D003634 3.3e-37 159.8 337 41.8
MD05G1208500 Malus domestica HOM05D003098 ORTHO05D003634 5.7e-37 159.1 339 41.3
MD10G1195000 Malus domestica HOM05D003098 ORTHO05D003634 5.7e-37 159.1 336 41.7
Hma1.2p1_1456F.1_g284580 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 7.5e-37 158.7 332 42.8
Actinidia18845 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.3e-36 157.9 319 42.6
COL.COLO4_17417 Corchorus olitorius HOM05D003098 ORTHO05D003634 1.3e-36 157.9 354 39.8
Gorai.013G177000 Gossypium raimondii HOM05D003098 ORTHO05D003634 1.3e-36 157.9 338 38.8
MBI10_g30422_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 2.2e-36 157.1 327 39.8
DCAR_021056 Daucus carota HOM05D003098 ORTHO05D003634 2.8e-36 156.8 350 39.7
Gohir.D13G156400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 8.2e-36 155.2 339 38.6
Lalb_Chr25g0285391 Lupinus albus HOM05D003098 ORTHO05D003634 8.2e-36 155.2 344 39.8
Gohir.D05G335700 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.4e-35 154.5 337 41.5
MBI07_g23222_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 1.8e-35 154.1 336 38.7
Prupe.4G148900 Prunus persica HOM05D003098 ORTHO05D003634 1.8e-35 154.1 339 40.7
Lj3g0011437 Lotus japonicus HOM05D003098 ORTHO05D003634 2.4e-35 153.7 366 38.5
Peaxi162Scf00111g00826 Petunia axillaris HOM05D003098 ORTHO05D003634 2.4e-35 153.7 346 38.7
PGR031G0814 Punica granatum HOM05D003098 ORTHO05D003634 4.1e-35 152.9 333 41.1
Hma1.2p1_0325F.1_g125950 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 7.0e-35 152.1 336 39.9
Gohir.A04G046600 Gossypium hirsutum HOM05D003098 ORTHO05D003634 5.9e-34 149.1 340 41.5
arahy.Tifrunner.gnm1.ann1.A6UZA5 Arachis hypogaea HOM05D003098 ORTHO05D003634 1.3e-33 147.9 380 38.7
CsaV3_4G007810 Cucumis sativus L. HOM05D003098 ORTHO05D003634 1.3e-33 147.9 350 38.9
RcHm_v2.0_Chr5g0027751 Rosa chinensis HOM05D003098 ORTHO05D003634 1.3e-33 147.9 336 41.4
Actinidia35176 Actinidia chinensis HOM05D003098 ORTHO05D003634 5.0e-33 146.0 318 40.6
Sabra16G0249000 Salix brachista HOM05D003098 ORTHO05D003634 2.5e-32 143.7 337 42.4
Actinidia04592 Actinidia chinensis HOM05D003098 ORTHO05D003634 3.2e-32 143.3 245 44.1
Nn3g20785 Nelumbo nucifera HOM05D003098 ORTHO05D003634 5.5e-32 142.5 342 38.6
TAR626G1321 Trochodendron aralioides HOM05D003098 ORTHO05D003634 9.4e-32 141.7 332 37.0
MELO3C016154.2 Cucumis melo HOM05D003098 ORTHO05D003634 1.2e-31 141.4 350 36.9
Aqoxy1G01700 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 1.6e-31 141.0 330 35.5
DCAR_013797 Daucus carota HOM05D003098 ORTHO05D003634 2.1e-31 140.6 335 38.5
FAN25G3533 Fragaria x ananassa HOM05D003098 ORTHO05D003634 3.6e-31 139.8 330 39.1
FAN16G2875 Fragaria x ananassa HOM05D003098 ORTHO05D003634 8.0e-31 138.7 332 40.1
Potri.011G096000 Populus trichocarpa HOM05D003098 ORTHO05D003634 1.4e-30 137.9 333 40.2
MSTRG.15009 Avicennia marina HOM05D003098 ORTHO05D003634 2.3e-30 137.1 342 37.7
Duzib187G1141 Durio zibethinus HOM05D003098 ORTHO05D003634 2.3e-30 137.1 372 36.0
FvH4_3g16610 Fragaria vesca HOM05D003098 ORTHO05D003634 2.3e-30 137.1 329 39.5
FAN11G1214 Fragaria x ananassa HOM05D003098 ORTHO05D003634 2.3e-30 137.1 329 39.5
Haze_08492 Corylus avellana HOM05D003098 ORTHO05D003634 3.0e-30 136.7 381 37.5
Cfa019454 Carpinus fangiana HOM05D003098 ORTHO05D003634 5.2e-30 136.0 343 38.8
Sed0021570 Sechium edule HOM05D003098 ORTHO05D003634 3.4e-29 133.3 339 37.5
FAN21G2223 Fragaria x ananassa HOM05D003098 ORTHO05D003634 5.7e-29 132.5 330 38.8
CSS0003040 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 7.5e-29 132.1 161 57.8
vmacro12016 Vaccinium macrocarpon HOM05D003098 ORTHO05D003634 7.5e-29 132.1 400 34.2
Oeu009883.1 Olea europaea HOM05D003098 ORTHO05D003634 4.8e-28 129.4 359 35.9
Gorai.009G359400 Gossypium raimondii HOM05D003098 ORTHO05D003634 1.1e-27 128.3 337 38.3
SGA_v2.0_scaffold181G39782 Striga asiatica HOM05D003098 ORTHO05D003634 1.1e-27 128.3 329 38.0
THA.LOC104808077 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.1e-27 128.3 344 37.5
HanXRQChr11g0330331 Helianthus annuus HOM05D003098 ORTHO05D003634 1.8e-27 127.5 332 38.3
Oeu050692.2 Olea europaea HOM05D003098 ORTHO05D003634 1.8e-27 127.5 333 33.6
PSO541G6535 Papaver somniferum HOM05D003098 ORTHO05D003634 1.8e-27 127.5 351 33.9
MSTRG.6711 Avicennia marina HOM05D003098 ORTHO05D003634 2.4e-27 127.1 334 36.8
Sed0018273 Sechium edule HOM05D003098 ORTHO05D003634 4.1e-27 126.3 354 37.3
PSO675G2036 Papaver somniferum HOM05D003098 ORTHO05D003634 7.0e-27 125.6 345 34.5
Lalb_Chr03g0031451 Lupinus albus HOM05D003098 ORTHO05D003634 1.2e-26 124.8 336 36.6
SGA_v2.0_scaffold73G24350 Striga asiatica HOM05D003098 ORTHO05D003634 1.2e-26 124.8 326 39.0
Dinv26666 Davidia involucrata HOM05D003098 ORTHO05D003634 1.6e-26 124.4 333 37.8
TPR.G26632 Trifolium pratense HOM05D003098 ORTHO05D003634 3.5e-26 123.2 345 35.1
Gohir.D01G029400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 4.5e-26 122.9 325 38.2
ECA236G5036 Erigeron canadensis HOM05D003098 ORTHO05D003634 2.3e-25 120.6 335 37.9
ATR0730G170 Amborella trichopoda HOM05D003098 ORTHO05D003634 3.8e-25 119.8 346 35.0
BcaB07g34048 Brassica carinata HOM05D003098 ORTHO05D003634 3.8e-25 119.8 157 53.5
Gorai.002G038700 Gossypium raimondii HOM05D003098 ORTHO05D003634 5.0e-25 119.4 325 37.5
SalBow8G0445 Salvia bowleyana HOM05D003098 ORTHO05D003634 1.5e-24 117.9 402 33.8
Nn4g26567 Nelumbo nucifera HOM05D003098 ORTHO05D003634 2.5e-24 117.1 339 35.7
A06p13040 Brassica napus HOM05D003098 ORTHO05D003634 3.2e-24 116.7 159 50.3
BolC5t30262H Brassica oleracea HOM05D003098 ORTHO05D003634 3.2e-24 116.7 160 53.1
BraA06t24463Z Brassica rapa HOM05D003098 ORTHO05D003634 3.2e-24 116.7 159 50.3
BcaC05g25664 Brassica carinata HOM05D003098 ORTHO05D003634 4.2e-24 116.3 159 52.8
Nitab4.5_0002495g0010 Nicotiana tabacum HOM05D003098 ORTHO05D003634 4.2e-24 116.3 259 38.2
Gohir.A01G041800 Gossypium hirsutum HOM05D003098 ORTHO05D003634 9.5e-24 115.2 325 37.2
C05p15520 Brassica napus HOM05D003098 ORTHO05D003634 1.6e-23 114.4 161 51.6
Lj1A810G57 Lonicera japonica HOM05D003098 ORTHO05D003634 2.1e-23 114.0 257 38.9
unitig_62.g23089 Utricularia gibba HOM05D003098 ORTHO05D003634 2.1e-23 114.0 186 46.8
ClCG07G010480 Citrullus lanatus HOM05D003098 ORTHO05D003634 3.6e-23 113.2 396 32.8
Sopen00g007320 Solanum pennellii HOM05D003098 ORTHO05D003634 3.6e-23 113.2 251 38.6
THA.LOC104812290 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 4.0e-22 109.8 328 34.8
Oeu058426.1 Olea europaea HOM05D003098 ORTHO05D003634 5.2e-22 109.4 175 46.9
SalBow8G0143 Salvia bowleyana HOM05D003098 ORTHO05D003634 8.8e-22 108.6 405 32.8
BolC6t40256H Brassica oleracea HOM05D003098 ORTHO05D003634 4.4e-21 106.3 336 36.6
Sopen07g030020 Solanum pennellii HOM05D003098 ORTHO05D003634 7.5e-21 105.5 179 41.9
A07p43680 Brassica napus HOM05D003098 ORTHO05D003634 1.7e-20 104.4 176 44.9
BraA07t31880Z Brassica rapa HOM05D003098 ORTHO05D003634 1.7e-20 104.4 176 44.9
Thhalv10018644m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 2.8e-20 103.6 172 44.2
Carub.0002s2532 Capsella rubella HOM05D003098 ORTHO05D003634 3.7e-20 103.2 178 42.7
QL04p070282 Quercus lobata HOM05D003098 ORTHO05D003634 4.9e-20 102.8 241 36.9
THA.LOC104813978 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 4.9e-20 102.8 177 44.6
AL2G38790 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 6.3e-20 102.4 177 42.4
AL1G29360 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 1.8e-19 100.9 187 43.9
AT1G78420 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 1.8e-19 100.9 175 41.7
BcaB03g16017 Brassica carinata HOM05D003098 ORTHO05D003634 1.8e-19 100.9 338 32.0
Migut.M00650 Erythranthe guttata HOM05D003098 ORTHO05D003634 1.8e-19 100.9 338 33.7
CARHR071940 Cardamine hirsuta HOM05D003098 ORTHO05D003634 2.4e-19 100.5 177 44.1
AT1G17145 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 7.0e-19 99.0 173 45.7
Sp5g33520 Schrenkiella parvula HOM05D003098 ORTHO05D003634 9.2e-19 98.6 176 41.5
BcaC08g47416 Brassica carinata HOM05D003098 ORTHO05D003634 1.6e-18 97.8 177 41.8
C06p52360 Brassica napus HOM05D003098 ORTHO05D003634 1.6e-18 97.8 177 41.8
BcaB05g25139 Brassica carinata HOM05D003098 ORTHO05D003634 1.7e-17 94.4 173 44.5
Lsat_1_v5_gn_7_101201 Lactuca sativa HOM05D003098 ORTHO05D003634 3.8e-17 93.2 190 41.6
Zm00001eb376630 Zea mays HOM05D003098 ORTHO05D003634 3.8e-17 93.2 347 33.4
BolC2t09574H Brassica oleracea HOM05D003098 ORTHO05D003634 1.5e-16 91.3 173 43.4
Sabra11G0092900 Salix brachista HOM05D003098 ORTHO05D003634 9.5e-16 88.6 232 38.8
BcaC03g15812 Brassica carinata HOM05D003098 ORTHO05D003634 1.2e-15 88.2 173 42.8
Thhalv10008156m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 1.2e-15 88.2 180 42.2
Sp1g15270 Schrenkiella parvula HOM05D003098 ORTHO05D003634 1.2e-15 88.2 169 40.8
C02p35590 Brassica napus HOM05D003098 ORTHO05D003634 2.1e-15 87.4 173 42.8
SEGI_26890 Sequoiadendron giganteum HOM05D003098 ORTHO05D003634 6.1e-15 85.9 407 31.0
A02p22180 Brassica napus HOM05D003098 ORTHO05D003634 1.0e-14 85.1 170 42.9
ECA234G0652 Erigeron canadensis HOM05D003098 ORTHO05D003634 1.8e-14 84.3 169 41.4
BraA02t07222Z Brassica rapa HOM05D003098 ORTHO05D003634 4.0e-14 83.2 159 44.7
HanXRQChr10g0305981 Helianthus annuus HOM05D003098 ORTHO05D003634 4.0e-14 83.2 185 39.5
HanXRQChr10g0305971 Helianthus annuus HOM05D003098 ORTHO05D003634 6.8e-14 82.4 185 39.5
Sabra11G0089500 Salix brachista HOM05D003098 ORTHO05D003634 1.5e-13 81.3 107 53.3
Zm00001eb204560 Zea mays HOM05D003098 ORTHO05D003634 2.0e-13 80.9 345 32.8
CARHR017690 Cardamine hirsuta HOM05D003098 ORTHO05D003634 3.4e-13 80.1 88 55.7
Zm00001eb238650 Zea mays HOM05D003098 ORTHO05D003634 7.5e-13 79.0 339 32.7
Aa31LG4G2540 Aethionema arabicum HOM05D003098 ORTHO05D003634 8.3e-12 75.5 166 39.8
Os02g0244100 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 1.8e-11 74.3 339 30.4
CDE10G0611 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 2.4e-11 73.9 325 28.0
Lsat_1_v5_gn_5_119821 Lactuca sativa HOM05D003098 ORTHO05D003634 2.3e-09 67.4 152 40.1
Pp3c3_24920 Physcomitrium patens HOM05D003098 ORTHO05D003634 3.9e-09 66.6 441 28.3
HPP92_009664 Vanilla planifolia HOM05D003098 ORTHO05D003634 3.9e-09 66.6 114 40.4
Zm00001eb271050 Zea mays HOM05D003098 ORTHO05D003634 9.5e-08 62.0 110 40.9
SHI32898 Sapria himalayana HOM05D000344 ORTHO05D005714 1.6e-07 61.2 168 38.1
HPP92_008221 Vanilla planifolia HOM05D003098 ORTHO05D003634 4.7e-07 59.7 340 28.2
Oeu020368.1 Olea europaea HOM05D003098 ORTHO05D003634 8.0e-07 58.9 87 47.1


User provided reference genes

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