Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.4e-98 361.7 188 100.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 2.4e-67 259.2 162 78.4
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 3.1e-67 258.8 162 75.9
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.2e-66 256.9 162 76.5
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.6e-66 256.5 162 77.2
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.7e-65 253.1 162 74.7
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 2.3e-65 252.7 162 74.7
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 5.0e-65 251.5 162 75.9
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 6.5e-65 251.1 162 75.3
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 8.6e-65 250.8 162 75.3
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 8.6e-65 250.8 162 75.3
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 8.6e-65 250.8 162 75.3
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.5e-64 250.0 162 74.1
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 1.9e-64 249.6 161 74.5
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.9e-64 249.6 162 74.1
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.9e-64 249.6 161 74.5
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 3.2e-64 248.8 162 72.8
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 4.2e-64 248.4 162 74.7
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 4.2e-64 248.4 161 73.9
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.5e-64 248.1 162 72.8
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 7.2e-64 247.7 162 72.8
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.2e-63 246.9 162 73.5
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 6.1e-63 244.6 162 72.8
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 6.1e-63 244.6 162 72.8
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 8.0e-63 244.2 162 72.8
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.0e-62 243.8 165 73.9
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.0e-62 243.8 166 69.9
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.0e-62 243.8 166 69.9
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.0e-62 243.8 162 73.5
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.8e-62 243.0 166 69.9
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 3.0e-62 242.3 166 70.5
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 4.0e-62 241.9 166 71.1
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 5.2e-62 241.5 168 69.0
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 6.8e-62 241.1 166 71.1
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 8.8e-62 240.7 166 69.9
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-61 240.4 166 69.9
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.5e-61 240.0 162 71.6
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.0e-61 239.6 162 72.2
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.0e-61 239.6 168 67.9
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 2.0e-61 239.6 162 71.0
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 2.6e-61 239.2 162 70.4
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.6e-61 239.2 162 71.6
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 4.4e-61 238.4 162 73.5
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 4.4e-61 238.4 162 69.8
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 5.7e-61 238.0 166 70.5
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.7e-61 238.0 166 70.5
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.7e-61 238.0 166 70.5
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.7e-61 238.0 166 70.5
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 7.5e-61 237.7 162 71.0
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.7e-60 236.5 168 70.2
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 1.7e-60 236.5 162 69.8
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-60 236.5 162 70.4
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-60 236.5 162 70.4
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 2.2e-60 236.1 162 72.8
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 2.8e-60 235.7 166 68.7
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 4.9e-60 235.0 163 71.8
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 6.3e-60 234.6 168 69.6
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 3.1e-59 232.3 161 72.7
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 3.1e-59 232.3 162 71.6
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 4.1e-59 231.9 162 71.0
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.1e-59 231.9 166 69.3
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 5.4e-59 231.5 162 68.5
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 9.2e-59 230.7 166 68.1
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 9.2e-59 230.7 166 68.1
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.2e-58 230.3 162 68.5
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.2e-58 230.3 162 71.0
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 1.2e-58 230.3 162 71.0
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.2e-58 230.3 162 71.0
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 1.2e-58 230.3 162 71.0
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 1.2e-58 230.3 162 71.0
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-58 229.9 162 69.8
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 2.7e-58 229.2 161 70.8
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 2.7e-58 229.2 162 67.3
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 4.5e-58 228.4 168 65.5
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 5.9e-58 228.0 162 69.8
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 7.8e-58 227.6 162 70.4
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 7.8e-58 227.6 162 67.3
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 7.8e-58 227.6 162 67.3
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 7.8e-58 227.6 162 67.3
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 7.8e-58 227.6 162 67.3
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.3e-57 226.9 153 70.6
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.3e-57 226.9 162 67.3
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-57 226.5 162 67.9
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 3.8e-57 225.3 162 65.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 3.8e-57 225.3 162 65.4
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 3.8e-57 225.3 162 66.0
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 3.8e-57 225.3 162 66.7
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 3.8e-57 225.3 162 67.9
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 3.8e-57 225.3 162 68.5
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 5.0e-57 224.9 162 66.0
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 5.0e-57 224.9 162 66.7
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 6.6e-57 224.6 166 65.7
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 6.6e-57 224.6 162 67.3
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 8.6e-57 224.2 162 66.0
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.1e-56 223.8 162 66.0
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.5e-56 223.4 166 65.7
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 2.5e-56 222.6 162 65.4
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 3.3e-56 222.2 162 65.4
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 7.3e-56 221.1 162 63.6
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 6.1e-55 218.0 162 67.3
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 8.0e-55 217.6 162 65.4
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 8.0e-55 217.6 165 64.8
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.0e-54 217.2 162 65.4
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.0e-54 217.2 165 64.8
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.0e-54 217.2 165 64.8
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.0e-54 217.2 165 64.8
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 3.0e-54 215.7 165 63.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 6.8e-54 214.5 165 64.2
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 6.8e-54 214.5 162 62.3
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.2e-53 213.8 162 64.2
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.7e-52 209.9 158 65.2
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.4e-51 206.8 161 63.4
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 4.1e-51 205.3 156 65.4
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 2.3e-49 199.5 144 70.1
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.5e-48 196.8 156 62.8
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 3.3e-48 195.7 145 66.9
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 9.5e-48 194.1 161 60.2
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.2e-47 193.7 171 57.3
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 2.8e-47 192.6 164 59.8
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.8e-46 189.9 156 61.5
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 5.8e-45 184.9 159 61.6
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.3e-44 183.7 136 66.9
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 4.9e-44 181.8 165 55.2
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.1e-43 180.6 162 57.4
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 3.2e-43 179.1 165 55.8
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.0e-41 174.1 155 56.1
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 1.3e-41 173.7 161 57.8
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 5.6e-40 168.3 162 53.7
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 8.1e-39 164.5 160 51.9
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 3.4e-37 159.1 155 51.6
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 2.1e-34 149.8 122 59.8
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 3.5e-34 149.1 162 52.5
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.5e-32 143.7 100 70.0
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.6e-29 132.9 113 58.4
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.4e-29 132.5 113 58.4
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 6.4e-28 128.3 156 47.4
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.7e-25 120.2 78 71.8
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.2e-23 114.0 81 66.7
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 6.2e-23 111.7 136 41.9
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.5e-21 107.1 86 61.6
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.7e-20 103.6 83 61.4
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 5.4e-19 98.6 105 54.3
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 6.6e-17 91.7 70 61.4
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.1e-15 86.7 67 58.2
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 5.8e-13 78.6 60 58.3
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 5.8e-13 78.6 65 58.5
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 6.2e-07 58.5 39 71.8


User provided reference genes

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