Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 6.2e-126 454.1 230 100.0
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 9.4e-98 360.5 230 79.6
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.9e-90 336.3 230 75.2
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.2e-90 335.5 230 74.3
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 7.2e-90 334.3 230 73.9
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 9.4e-90 334.0 231 74.5
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.2e-89 333.6 230 73.9
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.0e-88 330.5 230 71.7
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.4e-88 330.1 231 72.7
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 1.8e-88 329.7 232 73.7
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 2.3e-88 329.3 230 75.2
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 2.3e-88 329.3 230 72.6
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 3.9e-88 328.6 228 70.2
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 5.2e-88 328.2 230 73.9
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.2e-88 328.2 230 73.9
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 5.2e-88 328.2 230 72.6
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.1e-87 327.0 231 72.3
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.1e-87 327.0 231 72.3
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.0e-87 326.2 230 72.2
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 2.0e-87 326.2 232 74.1
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 2.0e-87 326.2 230 72.2
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 2.6e-87 325.9 230 73.0
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 2.6e-87 325.9 230 72.2
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 2.6e-87 325.9 230 72.2
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 3.3e-87 325.5 230 72.2
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 5.7e-87 324.7 228 69.7
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 9.7e-87 323.9 230 71.7
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 1.3e-86 323.6 230 73.0
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.7e-86 323.2 231 72.3
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 2.8e-86 322.4 232 72.0
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 4.8e-86 321.6 232 72.8
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.8e-86 321.6 231 71.9
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 6.3e-86 321.2 230 72.2
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 6.3e-86 321.2 230 72.6
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 8.2e-86 320.9 230 71.7
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.4e-85 320.1 230 70.9
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 2.4e-85 319.3 230 72.6
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 3.1e-85 318.9 231 72.3
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 4.1e-85 318.5 230 71.3
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 4.1e-85 318.5 230 71.7
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.1e-85 318.5 231 70.1
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.1e-85 318.5 231 70.6
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 5.3e-85 318.2 232 71.1
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 9.1e-85 317.4 231 70.1
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.2e-84 317.0 231 70.1
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.2e-84 317.0 231 71.9
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.2e-84 317.0 240 69.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.2e-84 317.0 232 70.3
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.6e-84 316.6 230 70.0
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 1.6e-84 316.6 231 68.8
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 3.5e-84 315.5 230 70.0
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.0e-83 313.9 230 67.4
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.3e-83 313.5 230 69.6
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.7e-83 313.2 232 70.3
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.7e-83 313.2 230 69.6
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 2.2e-83 312.8 230 68.3
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 2.2e-83 312.8 231 68.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 8.5e-83 310.8 230 69.1
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.5e-82 310.1 230 68.3
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.5e-82 309.3 232 70.3
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.5e-82 309.3 232 70.3
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 2.5e-82 309.3 256 65.2
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 3.2e-82 308.9 243 68.3
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 4.2e-82 308.5 230 68.7
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 7.2e-82 307.8 232 69.4
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.6e-81 306.6 232 67.7
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 1.6e-81 306.6 231 69.3
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 3.6e-81 305.4 230 69.1
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.0e-80 303.9 230 66.5
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.4e-80 303.5 290 59.0
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.4e-80 303.5 230 66.1
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.4e-80 303.5 230 66.1
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.8e-80 303.1 232 69.4
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 2.3e-80 302.8 230 67.4
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 1.5e-79 300.1 244 65.2
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 7.5e-79 297.7 230 66.5
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 1.7e-78 296.6 233 67.0
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.7e-78 296.6 230 65.7
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 3.7e-78 295.4 231 68.0
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.7e-78 295.4 230 68.3
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 4.8e-78 295.0 229 67.7
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 6.3e-78 294.7 301 54.8
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.1e-77 293.9 229 67.2
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 2.4e-77 292.7 220 70.0
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.4e-77 292.7 230 65.2
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.1e-77 292.4 230 65.2
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 4.1e-77 292.0 229 66.8
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 5.3e-77 291.6 232 66.8
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.3e-77 291.6 245 62.4
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 5.3e-77 291.6 232 66.8
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 7.0e-77 291.2 230 68.7
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.1e-77 290.8 230 64.8
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 9.1e-77 290.8 230 64.8
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 1.2e-76 290.4 230 66.5
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.2e-76 290.4 230 67.0
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 1.2e-76 290.4 230 65.7
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.2e-76 290.4 235 64.3
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-76 290.0 230 64.8
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 2.7e-76 289.3 230 66.5
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 5.9e-76 288.1 230 64.3
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.9e-76 288.1 230 65.2
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 7.7e-76 287.7 232 65.9
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 7.7e-76 287.7 230 66.1
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 1.0e-75 287.3 232 66.8
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 2.2e-75 286.2 265 59.2
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 2.2e-75 286.2 265 59.2
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.9e-75 285.8 232 66.8
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.8e-75 285.4 232 66.8
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 3.8e-75 285.4 252 59.5
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 5.0e-75 285.0 256 60.2
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 1.1e-74 283.9 232 65.5
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 4.2e-74 282.0 232 65.1
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 1.2e-73 280.4 265 58.5
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 4.7e-73 278.5 213 66.7
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 6.1e-73 278.1 231 67.1
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 4.4e-71 271.9 234 62.8
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 4.4e-71 271.9 213 67.1
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 3.7e-70 268.9 195 69.7
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.8e-69 266.5 176 77.8
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 3.1e-69 265.8 232 61.2
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 9.1e-69 264.2 200 71.0
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.7e-68 262.7 235 60.9
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.7e-67 260.0 276 55.4
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.9e-66 256.5 237 61.2
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.2e-65 253.8 190 68.9
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 3.6e-65 252.3 190 67.4
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 8.0e-65 251.1 213 63.8
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.0e-64 250.8 190 67.4
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 4.0e-64 248.8 191 67.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 4.0e-64 248.8 202 64.4
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 1.5e-63 246.9 169 76.3
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 6.3e-62 241.5 321 48.9
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 3.1e-61 239.2 173 70.5
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.1e-61 238.8 190 63.7
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 3.5e-60 235.7 192 66.7
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 5.9e-60 235.0 199 61.8
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 3.9e-59 232.3 174 67.2
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 1.1e-58 230.7 231 57.6
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.5e-58 230.3 229 56.3
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 7.3e-58 228.0 190 62.1
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.7e-57 225.3 233 57.1
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 4.0e-56 222.2 162 68.5
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 8.9e-56 221.1 231 53.7
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 2.6e-55 219.5 174 66.1
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 5.8e-55 218.4 232 53.9
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.7e-54 216.9 230 53.5
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.1e-53 214.2 175 63.4
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 6.0e-52 208.4 161 66.5
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.3e-51 206.5 230 53.9
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.3e-51 206.5 227 52.4
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.5e-50 203.8 131 78.6
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.5e-50 203.0 220 51.8
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 4.0e-48 195.7 154 65.6
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.1e-45 187.6 230 49.6
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 3.2e-45 186.0 200 51.5
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.3e-43 179.9 253 45.1
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.6e-41 173.7 152 63.2
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.1e-40 171.0 214 48.6
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.1e-40 169.5 126 67.5
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 8.9e-40 167.9 165 58.2
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 3.2e-37 159.5 140 59.3
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.2e-33 147.5 138 59.4
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 7.1e-29 131.7 91 71.4
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.2e-28 131.0 120 58.3
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 7.8e-28 128.3 189 44.4
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 1.7e-27 127.1 180 43.9
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 2.3e-27 126.7 88 71.6
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.8e-24 117.1 71 78.9
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 6.4e-22 108.6 74 73.0
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.0e-19 99.8 71 69.0
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 5.1e-19 99.0 235 36.2
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.8e-17 92.4 121 43.8
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 1.4e-16 90.9 74 64.9
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 6.9e-16 88.6 121 42.1
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 7.6e-15 85.1 92 50.0
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 1.1e-08 64.7 42 76.2
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.8e-08 63.9 138 34.1
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 5.3e-08 62.4 108 42.6
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.5e-07 59.3 34 76.5


User provided reference genes

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