Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 3.9e-229 797.7 387 100.0
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 1.5e-151 540.0 381 65.1
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 1.6e-150 536.6 385 67.0
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 6.7e-149 531.2 385 66.5
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 1.5e-148 530.0 382 66.5
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.5e-148 530.0 382 67.0
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.0e-148 529.6 385 66.2
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 9.7e-148 527.3 405 64.4
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.2e-147 526.2 385 65.5
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.5e-143 513.5 378 64.8
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 4.7e-142 508.4 384 64.1
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 1.4e-141 506.9 403 63.5
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 4.0e-141 505.4 390 63.8
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 5.2e-141 505.0 384 64.3
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 1.2e-140 503.8 387 62.5
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 2.0e-140 503.1 385 65.5
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 2.8e-139 499.2 380 64.5
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 2.0e-137 493.0 391 61.9
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 2.7e-137 492.7 383 63.4
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 4.5e-137 491.9 384 62.2
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 7.7e-137 491.1 392 63.3
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 7.7e-137 491.1 382 62.6
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 7.7e-137 491.1 381 60.1
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 2.3e-136 489.6 383 62.7
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 2.3e-136 489.6 396 60.1
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 5.0e-136 488.4 381 60.1
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 1.1e-135 487.3 381 59.8
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.5e-135 485.0 402 60.7
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 7.2e-135 484.6 392 61.2
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 2.8e-134 482.6 452 55.1
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 4.7e-134 481.9 391 60.6
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 4.7e-134 481.9 384 60.7
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 1.0e-133 480.7 385 61.6
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.4e-133 480.3 383 60.3
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.4e-133 480.3 392 60.7
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 3.0e-133 479.2 387 60.2
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 3.0e-133 479.2 387 60.5
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 4.0e-133 478.8 385 63.4
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 5.2e-133 478.4 385 60.8
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 6.8e-133 478.0 384 60.2
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 6.8e-133 478.0 384 60.2
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 1.2e-132 477.2 381 59.6
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 1.2e-132 477.2 385 60.3
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.5e-132 476.9 392 60.5
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 1.5e-132 476.9 386 61.1
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 3.4e-132 475.7 381 59.8
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.4e-132 475.3 401 58.9
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 4.4e-132 475.3 387 58.9
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 1.7e-131 473.4 382 58.9
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 2.2e-131 473.0 381 61.2
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.8e-131 472.6 383 60.6
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 3.7e-131 472.2 381 60.9
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 3.7e-131 472.2 386 58.8
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 4.9e-131 471.9 383 59.5
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 6.3e-131 471.5 381 60.6
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 8.3e-131 471.1 392 58.9
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.1e-130 470.7 354 64.7
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 7.0e-130 468.0 384 58.3
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 9.2e-130 467.6 383 62.9
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 2.0e-129 466.5 386 59.3
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 4.5e-129 465.3 409 58.9
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 5.9e-129 464.9 408 57.4
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 2.3e-128 463.0 378 59.3
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 3.8e-128 462.2 468 51.9
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.5e-127 460.3 377 59.4
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 1.9e-127 459.9 381 59.1
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.9e-127 459.9 430 54.9
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 1.9e-127 459.9 370 61.9
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.6e-126 456.8 430 54.4
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 5.2e-125 451.8 364 61.0
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 1.3e-123 447.2 495 48.7
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 1.7e-120 436.8 381 56.7
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 8.6e-120 434.5 378 56.6
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 4.3e-119 432.2 400 55.5
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 5.6e-119 431.8 368 58.2
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.4e-117 427.2 379 53.3
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 2.3e-117 426.4 383 55.6
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 1.7e-115 420.2 388 55.7
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 8.3e-115 417.9 382 55.5
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 1.6e-113 413.7 382 53.9
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 1.6e-113 413.7 387 53.2
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.0e-112 411.0 382 52.6
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 7.1e-106 388.3 301 65.1
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 9.2e-106 387.9 380 53.7
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 2.7e-105 386.3 499 44.3
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 8.6e-104 381.3 332 56.6
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 9.5e-103 377.9 410 51.0
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 2.5e-87 326.6 382 45.0
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 5.6e-87 325.5 421 44.7
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 3.6e-86 322.8 282 58.2
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 1.7e-83 313.9 213 69.5
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 4.2e-82 309.3 379 42.5
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 6.2e-78 295.4 296 53.4
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 4.0e-77 292.7 213 66.7
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 1.5e-76 290.8 380 40.0
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 8.2e-70 268.5 166 73.5
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 5.3e-69 265.8 236 54.2
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 5.8e-68 262.3 337 46.0
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 4.2e-66 256.1 166 71.7
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 2.1e-65 253.8 239 54.0
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.8e-62 243.4 412 39.8
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 9.0e-61 238.4 144 76.4
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 1.2e-60 238.0 250 51.2
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 5.3e-53 212.6 564 29.3
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.2e-52 211.5 136 69.1
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 2.3e-48 197.2 372 36.8
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 3.9e-48 196.4 376 35.4
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 6.7e-48 195.7 277 41.5
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.1e-47 194.9 126 72.2
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 1.7e-46 191.0 244 43.4
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 9.1e-45 185.3 127 62.2
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.2e-44 184.9 118 72.9
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 5.9e-44 182.6 112 75.0
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 8.5e-43 178.7 137 57.7
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.7e-38 164.5 242 39.3
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 4.1e-37 159.8 447 27.3
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.6e-36 157.1 99 69.7
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 2.6e-31 140.6 175 46.3
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 3.1e-29 133.7 79 70.9
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.9e-27 127.1 123 50.4
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.5e-26 124.8 411 27.0
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 1.8e-24 117.9 421 26.4
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 2.8e-22 110.5 458 24.7
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 3.1e-21 107.1 228 33.3
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 3.1e-21 107.1 228 33.3
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 6.1e-17 92.8 54 81.5
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 8.0e-17 92.4 75 57.3
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.5e-15 88.2 103 48.5
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 3.4e-15 87.0 69 55.1
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 6.3e-14 82.8 51 74.5
Actinidia06000 Actinidia chinensis HOM05D004386 ORTHO05D005247 2.1e-09 67.8 291 23.0
MCO05G657 Micromonas commoda HOM05D004386 ORTHO05D005247 2.8e-09 67.4 399 22.1
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 8.0e-09 65.9 40 72.5
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 2.0e-07 61.2 47 55.3
Eucgr.B00173 Eucalyptus grandis HOM05D000464 ORTHO05D006292 5.8e-07 59.7 152 26.3
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 7.5e-07 59.3 289 20.8
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 4.9e-06 56.6 289 21.1
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 6.4e-06 56.2 146 26.0
HanXRQChr16g0511391 Helianthus annuus HOM05D002332 ORTHO05D002509 8.3e-06 55.8 193 25.4


User provided reference genes

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