Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 8.3e-57 223.4 107 100.0
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 3.2e-48 194.9 103 88.3
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 4.1e-48 194.5 102 88.2
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.2e-47 193.0 104 87.5
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.2e-47 193.0 104 87.5
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.6e-47 192.6 104 85.6
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 2.1e-47 192.2 102 89.2
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 2.1e-47 192.2 102 88.2
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.7e-47 191.8 102 90.2
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 3.5e-47 191.4 102 89.2
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 3.5e-47 191.4 102 88.2
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 3.5e-47 191.4 104 86.5
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.5e-47 191.4 102 87.3
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.5e-47 191.4 102 87.3
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 3.5e-47 191.4 102 87.3
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 4.6e-47 191.0 104 86.5
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 4.6e-47 191.0 104 86.5
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 4.6e-47 191.0 104 86.5
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 6.0e-47 190.7 104 86.5
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 6.0e-47 190.7 104 86.5
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 7.8e-47 190.3 102 87.3
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 7.8e-47 190.3 102 86.3
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.0e-46 189.9 102 86.3
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 1.0e-46 189.9 104 85.6
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.0e-46 189.9 102 88.2
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.0e-46 189.9 102 87.3
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.0e-46 189.9 102 87.3
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.3e-46 189.5 104 85.6
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.3e-46 189.5 102 87.3
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.3e-46 189.5 104 85.6
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.7e-46 189.1 102 88.2
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.7e-46 189.1 102 86.3
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.7e-46 189.1 102 87.3
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 2.3e-46 188.7 104 83.7
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 3.9e-46 188.0 102 87.3
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 3.9e-46 188.0 102 87.3
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 5.1e-46 187.6 102 85.3
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 5.1e-46 187.6 102 85.3
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 5.1e-46 187.6 102 85.3
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 5.1e-46 187.6 104 83.7
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 5.1e-46 187.6 102 86.3
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.1e-46 187.6 102 86.3
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.1e-46 187.6 102 86.3
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.1e-46 187.6 102 86.3
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 5.1e-46 187.6 102 86.3
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 5.1e-46 187.6 104 84.6
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 5.1e-46 187.6 104 84.6
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 8.6e-46 186.8 102 85.3
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 8.6e-46 186.8 104 84.6
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 1.1e-45 186.4 102 85.3
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 1.1e-45 186.4 102 85.3
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.1e-45 186.4 102 86.3
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.5e-45 186.0 102 87.3
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.9e-45 185.7 102 84.3
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.9e-45 185.7 99 86.9
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.5e-45 185.3 104 84.6
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.5e-45 185.3 104 84.6
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.5e-45 185.3 102 84.3
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 3.3e-45 184.9 102 83.3
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.3e-45 184.9 104 82.7
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.3e-45 184.9 104 83.7
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.3e-45 184.5 102 83.3
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 4.3e-45 184.5 102 83.3
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 4.3e-45 184.5 102 86.3
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 4.3e-45 184.5 104 81.7
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 4.3e-45 184.5 104 82.7
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 5.6e-45 184.1 103 83.5
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.6e-45 184.1 102 85.3
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 7.3e-45 183.7 102 83.3
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 7.3e-45 183.7 102 84.3
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 9.5e-45 183.3 102 83.3
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.2e-44 183.0 102 84.3
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.2e-44 183.0 104 81.7
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.6e-44 182.6 102 83.3
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.6e-44 182.6 102 83.3
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.1e-44 182.2 104 79.8
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.8e-44 181.8 102 84.3
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 2.8e-44 181.8 102 85.3
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.6e-44 181.4 102 83.3
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 3.6e-44 181.4 104 80.8
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 3.6e-44 181.4 102 84.3
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 3.6e-44 181.4 102 82.4
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 6.2e-44 180.6 102 84.3
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 1.4e-43 179.5 102 83.3
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.4e-43 179.5 102 83.3
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.8e-43 179.1 102 83.3
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.8e-43 179.1 102 84.3
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 2.4e-43 178.7 102 83.3
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.1e-43 178.3 102 81.4
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 3.1e-43 178.3 97 85.6
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 6.8e-43 177.2 104 79.8
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 8.9e-43 176.8 102 80.4
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 8.9e-43 176.8 102 80.4
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.2e-42 176.4 102 79.4
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.2e-42 176.4 102 81.4
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.2e-42 176.4 102 81.4
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.9e-41 171.8 124 69.4
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 2.9e-41 171.8 102 79.4
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.6e-39 166.0 99 78.8
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.8e-39 163.7 102 75.5
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.3e-38 162.9 155 56.1
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 3.0e-38 161.8 134 62.7
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 5.1e-38 161.0 166 53.6
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 8.6e-38 160.2 134 61.9
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 8.6e-38 160.2 97 76.3
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.1e-37 159.8 102 72.5
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 4.3e-37 157.9 103 69.9
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 1.2e-36 156.4 99 70.7
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 6.9e-35 150.6 103 64.1
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.9e-35 150.6 80 87.5
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 4.4e-34 147.9 79 86.1
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-33 146.4 102 74.5
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.9e-33 145.2 97 69.1
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 1.4e-32 142.9 103 70.9
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-32 142.9 85 76.5
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 3.2e-32 141.7 99 64.6
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.7e-31 138.7 90 72.2
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 3.9e-30 134.8 87 69.0
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.1e-29 133.3 85 77.6
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.5e-29 132.9 102 65.7
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.3e-29 130.6 75 80.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 8.1e-28 127.1 71 80.3
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-26 122.5 68 80.9
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.5e-26 121.3 89 70.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.3e-22 109.0 64 78.1
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-21 106.7 65 75.4
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.6e-20 102.8 56 85.7
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 2.1e-20 102.4 59 83.1
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.1e-19 100.1 57 82.5
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.4e-19 99.8 57 80.7
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 5.3e-19 97.8 57 80.7
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 5.3e-19 97.8 57 80.7
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 5.3e-19 97.8 106 54.7
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 1.2e-18 96.7 57 78.9
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 1.2e-18 96.7 57 78.9
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 2.0e-18 95.9 60 80.0
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-16 90.1 59 71.2
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-16 89.0 58 70.7
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.5e-15 85.1 51 80.4
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 7.9e-15 84.0 46 78.3
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.0e-14 82.0 62 61.3
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 3.9e-14 81.6 43 81.4
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.3e-12 76.6 55 67.3
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 4.5e-10 68.2 41 75.6
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.1e-08 63.5 42 73.8
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.4e-08 63.2 38 78.9
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.3e-06 55.8 57 52.6


User provided reference genes

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