Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 4.8e-174 615.5 680 100.0
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.7e-62 245.0 180 75.6
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.7e-62 245.0 180 75.6
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 2.9e-62 244.2 178 75.8
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 3.8e-62 243.8 153 84.3
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 3.8e-62 243.8 179 75.4
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 6.4e-62 243.0 179 75.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 6.4e-62 243.0 180 75.6
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 8.4e-62 242.7 179 75.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 8.4e-62 242.7 177 75.7
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.1e-61 242.3 179 75.4
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.1e-61 242.3 178 75.3
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.1e-61 242.3 179 74.9
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.4e-61 241.9 147 87.8
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 2.5e-61 241.1 179 74.9
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 3.2e-61 240.7 180 75.0
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 4.2e-61 240.4 178 74.7
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 5.5e-61 240.0 177 75.1
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 5.5e-61 240.0 177 75.1
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 7.1e-61 239.6 179 74.3
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 7.1e-61 239.6 178 74.7
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 9.3e-61 239.2 162 79.6
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 9.3e-61 239.2 179 74.9
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.6e-60 238.4 148 85.1
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.6e-60 238.4 147 86.4
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.6e-60 238.4 146 86.3
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 1.6e-60 238.4 179 73.7
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 2.1e-60 238.0 179 74.3
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 2.1e-60 238.0 179 74.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.7e-60 237.7 149 83.9
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 2.7e-60 237.7 146 87.0
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 3.5e-60 237.3 179 73.7
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 3.5e-60 237.3 180 73.9
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 4.6e-60 236.9 178 73.6
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.8e-59 235.0 178 72.5
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.3e-59 234.6 179 72.6
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 2.3e-59 234.6 178 73.6
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 3.0e-59 234.2 179 72.6
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 3.0e-59 234.2 179 72.6
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.9e-59 233.8 179 71.5
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.9e-59 233.8 179 72.1
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 5.1e-59 233.4 177 73.4
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 5.1e-59 233.4 179 72.6
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 5.1e-59 233.4 179 72.1
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 5.1e-59 233.4 176 71.6
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 5.1e-59 233.4 160 78.1
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 6.7e-59 233.0 179 72.1
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 6.7e-59 233.0 381 58.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 6.7e-59 233.0 179 72.1
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 6.7e-59 233.0 177 73.4
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 6.7e-59 233.0 146 85.6
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.1e-58 232.3 179 72.1
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.1e-58 232.3 179 72.1
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.1e-58 232.3 178 72.5
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.5e-58 231.9 148 83.1
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 1.9e-58 231.5 179 71.5
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.5e-58 231.1 177 72.9
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.5e-58 231.1 179 71.5
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 2.5e-58 231.1 176 71.6
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 2.5e-58 231.1 176 71.6
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 3.3e-58 230.7 179 71.5
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 3.3e-58 230.7 179 71.5
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 3.3e-58 230.7 179 71.5
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 4.3e-58 230.3 145 84.8
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 4.3e-58 230.3 148 82.4
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 5.6e-58 229.9 179 72.1
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 5.6e-58 229.9 179 72.1
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 7.4e-58 229.6 172 75.0
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 7.4e-58 229.6 177 72.9
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 9.6e-58 229.2 145 84.8
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.6e-57 228.4 180 70.0
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.1e-57 228.0 179 70.4
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 2.1e-57 228.0 148 83.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.1e-57 228.0 177 71.2
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.8e-57 227.6 177 72.3
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 2.8e-57 227.6 147 81.6
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 3.7e-57 227.3 179 70.4
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 4.8e-57 226.9 174 73.6
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-56 225.7 149 79.2
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-56 225.7 149 79.2
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.8e-56 224.9 155 79.4
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.1e-56 224.2 149 78.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.1e-56 224.2 149 78.5
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.0e-56 223.8 149 78.5
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 9.0e-56 222.6 152 77.6
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 9.0e-56 222.6 149 78.5
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 3.4e-55 220.7 179 67.6
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.8e-55 219.9 149 77.2
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 7.6e-55 219.5 179 67.6
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.7e-54 218.4 179 67.0
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.7e-54 218.4 179 68.2
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.1e-53 215.7 179 67.0
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.5e-53 214.5 177 67.8
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.5e-53 213.4 177 67.8
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 1.8e-51 208.4 162 71.0
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 2.3e-51 208.0 217 58.1
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 3.9e-51 207.2 163 69.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 3.9e-51 207.2 149 71.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.1e-50 205.7 148 73.6
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 4.1e-48 197.2 179 60.9
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 7.7e-47 193.0 149 66.4
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 2.2e-46 191.4 147 66.0
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 5.1e-43 180.3 149 63.8
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 8.8e-43 179.5 180 60.0
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 5.7e-42 176.8 163 64.4
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.9e-37 161.8 166 59.6
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.0e-31 141.7 122 67.2
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.9e-27 127.5 103 70.9
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.9e-21 108.6 82 72.0
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.2e-21 107.5 92 64.1
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.2e-20 105.9 142 45.1
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 4.7e-20 104.0 64 81.2
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 2.8e-17 94.7 56 83.9
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.8e-17 94.0 58 75.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 2.7e-15 88.2 163 37.4
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.9e-14 84.7 66 65.2
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 8.5e-14 83.2 143 33.6
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 8.5e-14 83.2 143 33.6
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.1e-12 78.6 67 62.7
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 8.8e-11 73.2 52 67.3
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-10 72.8 41 82.9
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-10 72.8 42 81.0
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 5.9e-07 60.5 57 61.4
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.3e-06 59.3 51 58.8
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 2.3e-06 58.5 158 26.6
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 8.6e-06 56.6 35 74.3


User provided reference genes

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