Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.7e-265 918.7 431 100.0
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 3.7e-172 608.6 408 73.5
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 3.8e-169 598.6 417 71.7
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 4.0e-166 588.6 407 72.0
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.1e-160 570.5 408 69.4
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.0e-158 563.9 417 65.2
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.5e-157 560.1 408 65.4
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.5e-157 560.1 409 66.0
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 2.2e-156 556.2 416 65.6
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 4.9e-156 555.1 407 67.1
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 6.3e-156 554.7 406 67.0
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 8.3e-156 554.3 408 65.4
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.8e-155 553.1 425 63.1
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.6e-154 550.1 408 64.7
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 2.7e-154 549.3 408 64.7
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 4.5e-154 548.5 408 65.2
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 2.9e-153 545.8 425 64.2
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 8.6e-153 544.3 408 63.7
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 2.5e-152 542.7 417 63.5
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 2.5e-152 542.7 408 63.2
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 2.5e-152 542.7 408 64.2
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 1.6e-151 540.0 457 59.3
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 2.8e-151 539.3 408 64.0
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 4.7e-151 538.5 407 64.9
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 6.1e-151 538.1 408 65.2
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 8.0e-151 537.7 417 63.3
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.0e-150 537.3 408 63.5
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.4e-150 537.0 408 64.2
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 3.1e-150 535.8 406 64.3
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 3.1e-150 535.8 407 64.6
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 3.1e-150 535.8 407 64.6
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 8.9e-150 534.3 408 64.0
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 1.5e-149 533.5 408 63.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 1.5e-149 533.5 409 63.3
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 9.8e-149 530.8 408 63.5
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 1.7e-148 530.0 409 61.9
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 3.7e-148 528.9 408 62.7
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 8.3e-148 527.7 417 62.4
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.9e-147 526.6 408 62.5
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.9e-147 526.6 408 62.5
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 2.4e-147 526.2 407 62.2
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 3.2e-147 525.8 407 62.7
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 5.4e-147 525.0 408 62.3
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 7.0e-147 524.6 407 63.4
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 9.2e-147 524.2 408 62.5
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.2e-146 523.9 407 62.2
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.7e-145 520.0 407 61.7
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.7e-145 520.0 408 61.0
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.0e-145 519.2 408 61.5
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.9e-145 518.8 411 61.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.1e-144 517.3 414 59.9
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.1e-144 517.3 407 60.7
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.5e-144 516.9 407 60.9
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 1.5e-144 516.9 408 61.3
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.5e-144 516.2 413 60.0
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 3.3e-144 515.8 407 61.2
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 3.3e-144 515.8 407 61.2
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 4.3e-144 515.4 408 62.3
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 4.3e-144 515.4 408 62.0
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 7.3e-144 514.6 410 61.2
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.2e-143 513.8 407 60.7
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.6e-143 513.5 408 61.0
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 2.1e-143 513.1 407 60.9
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.6e-143 512.3 417 59.7
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 6.2e-143 511.5 417 59.5
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.4e-142 510.4 408 61.0
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.8e-142 510.0 408 60.3
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 2.3e-142 509.6 408 61.0
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 4.0e-142 508.8 408 60.5
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 6.8e-142 508.1 417 59.2
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 1.5e-141 506.9 408 60.8
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.0e-141 506.5 388 62.9
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 5.8e-141 505.0 409 61.1
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.8e-141 505.0 388 62.6
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.3e-140 503.8 403 60.3
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.3e-140 503.8 408 60.8
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 4.9e-140 501.9 417 59.5
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.9e-139 500.0 409 60.4
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 2.4e-139 499.6 425 58.4
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 7.0e-139 498.0 407 59.2
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 9.2e-139 497.7 408 60.3
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 4.6e-138 495.4 407 59.5
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 4.6e-138 495.4 407 59.5
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.3e-137 493.0 408 61.0
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.9e-137 492.3 430 56.5
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 6.6e-137 491.5 407 59.2
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.1e-136 490.7 407 59.2
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 9.5e-136 487.6 405 61.2
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.8e-135 486.1 411 58.4
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 2.8e-135 486.1 454 54.6
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.7e-135 485.3 408 59.6
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 5.2e-134 481.9 404 58.7
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 7.5e-133 478.0 407 57.5
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 6.4e-132 474.9 362 62.4
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.9e-131 473.4 388 59.5
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.6e-130 470.3 388 59.0
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.9e-128 463.4 414 53.6
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 2.8e-127 459.5 364 60.7
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 3.6e-127 459.1 365 60.5
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 3.6e-127 459.1 365 60.5
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 7.1e-123 444.9 387 56.6
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 3.9e-121 439.1 419 52.5
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 7.3e-120 434.9 419 51.6
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 1.6e-119 433.7 366 57.9
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 2.4e-118 429.9 391 56.5
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-117 427.6 375 56.5
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.6e-114 417.2 419 50.4
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 4.0e-110 402.5 338 57.7
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 4.9e-108 395.6 324 58.6
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 4.3e-104 382.5 223 78.0
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 8.1e-103 378.3 201 85.1
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.1e-96 357.8 409 47.9
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 2.4e-94 350.1 320 54.4
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 2.2e-92 343.6 180 86.7
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 5.1e-73 279.3 412 36.2
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.5e-72 277.7 415 35.7
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.3e-72 276.6 158 75.9
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 3.8e-68 263.1 298 46.0
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.9e-67 260.8 281 47.7
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 7.2e-67 258.8 410 34.4
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 5.2e-65 252.7 199 60.3
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.8e-63 246.9 261 49.4
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.5e-59 234.6 144 72.2
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 4.7e-50 203.0 126 71.4
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 5.9e-45 186.0 108 78.7
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 3.3e-43 180.3 426 27.9
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 1.8e-41 174.5 85 92.9
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.2e-38 163.7 114 67.5
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.0e-28 130.6 108 58.3
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.5e-27 128.3 98 64.3
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.8e-25 121.3 82 63.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 5.2e-25 119.8 70 72.9
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 4.4e-24 116.7 365 25.2
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 1.4e-22 111.7 79 69.6
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.7e-21 107.5 84 63.1
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 7.8e-21 105.9 68 69.1
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.4e-14 83.2 44 79.5
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.4e-14 83.2 54 72.2
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 4.3e-11 73.6 254 23.2
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.6e-10 71.6 46 71.7
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 6.2e-10 69.7 60 50.0
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.8e-09 68.2 98 37.8
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 1.8e-09 68.2 34 85.3
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 8.9e-09 65.9 42 64.3
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.4e-08 63.9 32 78.1
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 7.6e-08 62.8 117 25.6
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 2.2e-07 61.2 57 42.1
Sopen01g053630 Solanum pennellii HOM05D000347 ORTHO05D001997 2.2e-07 61.2 117 25.6
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.9e-07 60.8 42 54.8
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 2.9e-07 60.8 117 25.6
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 6.4e-07 59.7 68 41.2
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 2.4e-06 57.8 117 23.1
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 2.4e-06 57.8 117 24.8
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 3.2e-06 57.4 117 23.1
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 7.1e-06 56.2 137 28.5


User provided reference genes

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