Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4245 Salvia bowleyana HOM05D003334 ORTHO05D009628 9.7e-115 416.8 202 100.0
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 9.3e-09 64.7 37 78.4
BolC3t16362H Brassica oleracea HOM05D003334 ORTHO05D004076 9.3e-09 64.7 37 78.4
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 1.6e-08 63.9 43 74.4
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 1.6e-08 63.9 43 74.4
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 2.1e-08 63.5 43 72.1
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 2.1e-08 63.5 37 75.7
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 2.7e-08 63.2 43 72.1
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 2.7e-08 63.2 43 72.1
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 2.7e-08 63.2 43 72.1
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 2.7e-08 63.2 58 62.1
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 3.5e-08 62.8 43 72.1
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 3.5e-08 62.8 82 48.8
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 4.6e-08 62.4 37 75.7
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 4.6e-08 62.4 36 77.8
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 4.6e-08 62.4 43 69.8
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 6.1e-08 62.0 44 70.5
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 69.8
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 72.1
Hund21749 Selenicereus undatus HOM05D003334 ORTHO05D004076 6.1e-08 62.0 43 69.8
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 7.9e-08 61.6 43 69.8
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 7.9e-08 61.6 35 80.0
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 1.0e-07 61.2 82 47.6
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 1.0e-07 61.2 82 47.6
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 1.0e-07 61.2 82 47.6
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
SGA_v2.0_scaffold269G46296 Striga asiatica HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.0e-07 61.2 43 69.8
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 1.3e-07 60.8 34 82.4
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 1.3e-07 60.8 43 69.8
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 1.3e-07 60.8 34 82.4
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 1.3e-07 60.8 34 82.4
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 1.3e-07 60.8 34 82.4
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 1.3e-07 60.8 34 82.4
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 1.3e-07 60.8 34 82.4
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 1.3e-07 60.8 34 82.4
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 1.3e-07 60.8 43 69.8
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 1.3e-07 60.8 43 69.8
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 1.3e-07 60.8 82 46.3
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 1.3e-07 60.8 33 84.8
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 1.3e-07 60.8 43 69.8
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 1.3e-07 60.8 33 81.8
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 1.3e-07 60.8 34 82.4
SEGI_21996 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 1.3e-07 60.8 45 68.9
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 1.3e-07 60.8 43 69.8
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 1.3e-07 60.8 43 69.8
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.8e-07 60.5 35 77.1
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 1.8e-07 60.5 33 84.8
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 1.8e-07 60.5 40 70.0
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 1.8e-07 60.5 33 84.8
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.8e-07 60.5 33 84.8
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.8e-07 60.5 33 84.8
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.8e-07 60.5 33 84.8
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 2.3e-07 60.1 43 67.4
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 2.3e-07 60.1 43 67.4
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 2.3e-07 60.1 58 58.6
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 2.3e-07 60.1 34 79.4
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 3.0e-07 59.7 34 79.4
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 3.0e-07 59.7 34 79.4
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 3.0e-07 59.7 34 79.4
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 3.0e-07 59.7 43 67.4
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 3.0e-07 59.7 45 64.4
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 3.0e-07 59.7 43 69.8
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 3.0e-07 59.7 35 77.1
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 3.0e-07 59.7 43 69.8
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 3.0e-07 59.7 43 69.8
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 3.0e-07 59.7 43 69.8
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 3.0e-07 59.7 43 69.8
Peaxi162Scf00213g01416 Petunia axillaris HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 3.0e-07 59.7 43 69.8
SalBow8G3557 Salvia bowleyana HOM05D006352 ORTHO05D009628 3.0e-07 59.7 66 42.4
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 3.0e-07 59.7 33 81.8
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 3.9e-07 59.3 33 81.8
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 3.9e-07 59.3 33 81.8
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 3.9e-07 59.3 33 81.8
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 3.9e-07 59.3 82 47.6
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 5.1e-07 58.9 33 81.8
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 5.1e-07 58.9 33 81.8
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 5.1e-07 58.9 43 67.4
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 6.7e-07 58.5 43 67.4
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 6.7e-07 58.5 33 78.8
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 6.7e-07 58.5 43 67.4
CARHR078790 Cardamine hirsuta HOM05D003334 ORTHO05D004076 8.7e-07 58.2 33 78.8
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 8.7e-07 58.2 58 56.9
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 8.7e-07 58.2 43 65.1
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 8.7e-07 58.2 45 62.2
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 8.7e-07 58.2 33 78.8
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 8.7e-07 58.2 53 58.5
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 1.5e-06 57.4 43 65.1
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 1.5e-06 57.4 33 78.8
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 1.5e-06 57.4 43 65.1
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 1.5e-06 57.4 33 78.8
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 1.5e-06 57.4 43 65.1
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 1.5e-06 57.4 43 62.8
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 1.5e-06 57.4 43 62.8
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 1.5e-06 57.4 43 65.1
SalBow2G0878 Salvia bowleyana HOM05D006352 ORTHO05D009628 1.9e-06 57.0 78 34.6
SalBow5G4697 Salvia bowleyana HOM05D006352 ORTHO05D009628 1.9e-06 57.0 78 34.6
SalBow6G1045 Salvia bowleyana HOM05D006352 ORTHO05D009628 1.9e-06 57.0 78 34.6
SalBow6G2100 Salvia bowleyana HOM05D006352 ORTHO05D009628 1.9e-06 57.0 78 34.6
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.9e-06 57.0 43 65.1
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 1.9e-06 57.0 50 60.0
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 2.5e-06 56.6 43 65.1
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 2.5e-06 56.6 81 42.0
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 3.3e-06 56.2 33 78.8
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 3.3e-06 56.2 28 89.3
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 3.3e-06 56.2 43 62.8
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 3.3e-06 56.2 43 62.8
SalBow7G4518 Salvia bowleyana HOM05D006352 ORTHO05D009628 3.3e-06 56.2 77 35.1
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 3.3e-06 56.2 43 62.8
BolC7t40804H Brassica oleracea HOM05D003334 ORTHO05D004076 4.3e-06 55.8 34 73.5
SalBow2G0056 Salvia bowleyana HOM05D006352 ORTHO05D009628 7.4e-06 55.1 58 43.1
SalBow6G4119 Salvia bowleyana HOM05D001856 ORTHO05D009628 7.4e-06 55.1 78 37.2
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 9.7e-06 54.7 37 64.9
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 9.7e-06 54.7 37 64.9
QL01p002104 Quercus lobata HOM05D003334 ORTHO05D004076 9.7e-06 54.7 41 65.9


User provided reference genes

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