Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G6758 Salvia bowleyana HOM05D000538 ORTHO05D000614 8.5e-54 213.4 106 100.0
SalBow1G6852 Salvia bowleyana HOM05D000538 ORTHO05D000614 9.5e-29 130.2 64 98.4
MSTRG.14159 Avicennia marina HOM05D000538 ORTHO05D000614 1.9e-21 105.9 67 74.6
SGA_v2.0_scaffold62G21365 Striga asiatica HOM05D000538 ORTHO05D000614 1.0e-14 83.6 67 59.7
Migut.H01208 Erythranthe guttata HOM05D000538 ORTHO05D000614 3.9e-14 81.6 71 53.5
Peaxi162Scf00007g00141 Petunia axillaris HOM05D000538 ORTHO05D000614 3.9e-14 81.6 63 55.6
SGA_v2.0_scaffold67G22572 Striga asiatica HOM05D000538 ORTHO05D000614 3.9e-14 81.6 69 60.9
Sopen07g026390 Solanum pennellii HOM05D000538 ORTHO05D012213 1.9e-13 79.3 63 54.0
Solyc07g052900.1 Solanum lycopersicum HOM05D000538 ORTHO05D000614 5.6e-13 77.8 74 43.2
Sopen07g026450 Solanum pennellii HOM05D000538 ORTHO05D012213 5.6e-13 77.8 74 43.2
PGSC0003DMG400026195 Solanum tuberosum HOM05D000538 ORTHO05D012213 7.3e-13 77.4 63 54.0
CAN.G86.22 Capsicum annuum HOM05D000538 ORTHO05D000614 9.5e-13 77.0 64 53.1
Dinv10905 Davidia involucrata HOM05D000538 ORTHO05D000614 9.5e-13 77.0 64 54.7
Actinidia24277 Actinidia chinensis HOM05D000538 ORTHO05D000614 1.2e-12 76.6 67 55.2
Actinidia12491 Actinidia chinensis HOM05D000538 ORTHO05D000614 1.6e-12 76.3 67 55.2
PGSC0003DMG400026196 Solanum tuberosum HOM05D000538 ORTHO05D000614 1.6e-12 76.3 63 50.8
Solyc07g052760.3 Solanum lycopersicum HOM05D000538 ORTHO05D012213 2.8e-12 75.5 63 54.0
Sopen07g026380 Solanum pennellii HOM05D000538 ORTHO05D012213 2.8e-12 75.5 63 54.0
Nitab4.5_0001134g0160 Nicotiana tabacum HOM05D000538 ORTHO05D000614 3.6e-12 75.1 65 56.9
Nitab4.5_0003429g0050 Nicotiana tabacum HOM05D000538 ORTHO05D000614 8.1e-12 73.9 65 55.4
Lj8P121T27 Lonicera japonica HOM05D000538 ORTHO05D000614 1.4e-11 73.2 67 52.2
MELO3C027126.2 Cucumis melo HOM05D000538 ORTHO05D000614 3.1e-11 72.0 67 53.7
CsaV3_6G049420 Cucumis sativus L. HOM05D000538 ORTHO05D000614 3.1e-11 72.0 67 53.7
Sopen07g026360 Solanum pennellii HOM05D000538 ORTHO05D012213 3.1e-11 72.0 63 49.2
FvH4_3g02930 Fragaria vesca HOM05D000538 ORTHO05D000614 4.0e-11 71.6 61 57.4
FAN21G0633 Fragaria x ananassa HOM05D000538 ORTHO05D000614 8.9e-11 70.5 61 55.7
FAN21G1131 Fragaria x ananassa HOM05D000538 ORTHO05D000614 8.9e-11 70.5 61 55.7
FAN25G1625 Fragaria x ananassa HOM05D000538 ORTHO05D000614 8.9e-11 70.5 61 55.7
Atru.chr1.3753 Acer truncatum HOM05D000538 ORTHO05D000614 1.2e-10 70.1 58 56.9
ClCG01G022290 Citrullus lanatus HOM05D000538 ORTHO05D000614 1.2e-10 70.1 67 53.7
RcHm_v2.0_Chr5g0004541 Rosa chinensis HOM05D000538 ORTHO05D000614 1.5e-10 69.7 61 57.4
SGA_v2.0_scaffold52G19049 Striga asiatica HOM05D000538 ORTHO05D000614 1.5e-10 69.7 67 53.7
Manes.12G076500 Manihot esculenta HOM05D000538 ORTHO05D000614 2.0e-10 69.3 67 50.7
RcHm_v2.0_Chr2g0160351 Rosa chinensis HOM05D000538 ORTHO05D000614 2.6e-10 68.9 72 47.2
Solyc07g052830.4 Solanum lycopersicum HOM05D000538 ORTHO05D012213 2.6e-10 68.9 52 55.8
Dinv18544 Davidia involucrata HOM05D000538 ORTHO05D000614 5.8e-10 67.8 68 50.0
COL.COLO4_13007 Corchorus olitorius HOM05D000538 ORTHO05D000614 9.9e-10 67.0 67 47.8
Sed0014375 Sechium edule HOM05D000538 ORTHO05D000614 9.9e-10 67.0 67 52.2
Ciclev10015528m.g Citrus clementina HOM05D000538 ORTHO05D000614 1.3e-09 66.6 68 51.5
MD05G1335900 Malus domestica HOM05D000538 ORTHO05D000614 1.3e-09 66.6 57 50.9
MSTRG.9015 Avicennia marina HOM05D000538 ORTHO05D000614 1.7e-09 66.2 67 52.2
QL08p034081 Quercus lobata HOM05D000538 ORTHO05D000614 2.2e-09 65.9 68 48.5
Sc21g0001810 Simmondsia chinensis HOM05D000538 ORTHO05D000614 2.2e-09 65.9 67 47.8
Dinv18944 Davidia involucrata HOM05D000538 ORTHO05D000614 2.9e-09 65.5 67 49.3
FAN09G4736 Fragaria x ananassa HOM05D000538 ORTHO05D000614 2.9e-09 65.5 76 46.1
Prupe.3G046700 Prunus persica HOM05D002395 ORTHO05D000614 2.9e-09 65.5 58 51.7
vmacro12238 Vaccinium macrocarpon HOM05D000538 ORTHO05D000614 2.9e-09 65.5 67 47.8
CiPaw.04G118800 Carya illinoinensis HOM05D000538 ORTHO05D000614 3.8e-09 65.1 65 53.8
MELO3C007351.2 Cucumis melo HOM05D000538 ORTHO05D000614 3.8e-09 65.1 63 52.4
HanXRQChr03g0087661 Helianthus annuus HOM05D000538 ORTHO05D000614 3.8e-09 65.1 67 52.2
Lju1220C3T4 Lonicera japonica HOM05D000538 ORTHO05D000614 3.8e-09 65.1 68 48.5
Aqoxy1G00856 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 4.9e-09 64.7 61 45.9
Sed0011252 Sechium edule HOM05D000538 ORTHO05D000614 4.9e-09 64.7 67 49.3
Duzib248G0414 Durio zibethinus HOM05D000538 ORTHO05D000614 6.4e-09 64.3 67 49.3
Potri.001G293900 Populus trichocarpa HOM05D000538 ORTHO05D000614 6.4e-09 64.3 66 48.5
Rhsim06G0156300 Rhododendron simsii HOM05D000538 ORTHO05D000614 6.4e-09 64.3 67 50.7
ClCG02G001630 Citrullus lanatus HOM05D000538 ORTHO05D000614 1.1e-08 63.5 66 50.0
CsaV3_7G003860 Cucumis sativus L. HOM05D000538 ORTHO05D000614 1.1e-08 63.5 66 50.0
Prupe.3G222100 Prunus persica HOM05D000538 ORTHO05D000614 1.1e-08 63.5 64 50.0
Rhsim13G0162300 Rhododendron simsii HOM05D000538 ORTHO05D000614 1.1e-08 63.5 61 47.5
Cpa.g.sc8.251 Carica papaya HOM05D000538 ORTHO05D000614 1.4e-08 63.2 68 50.0
FvH4_6g43700 Fragaria vesca HOM05D000538 ORTHO05D000614 1.4e-08 63.2 74 44.6
FAN14G0602 Fragaria x ananassa HOM05D000538 ORTHO05D000614 1.4e-08 63.2 74 44.6
Lsat_1_v5_gn_1_81901 Lactuca sativa HOM05D000538 ORTHO05D000614 1.4e-08 63.2 68 52.9
Potri.009G088400 Populus trichocarpa HOM05D000538 ORTHO05D000614 1.4e-08 63.2 66 47.0
Sed0002193 Sechium edule HOM05D000538 ORTHO05D000614 1.4e-08 63.2 66 48.5
FAN05G1770 Fragaria x ananassa HOM05D000538 ORTHO05D000614 1.9e-08 62.8 76 43.4
Lj8P55T60 Lonicera japonica HOM05D000538 ORTHO05D000614 1.9e-08 62.8 58 51.7
Actinidia05541 Actinidia chinensis HOM05D000538 ORTHO05D000614 2.4e-08 62.4 67 46.3
MSTRG.13164 Avicennia marina HOM05D000538 ORTHO05D000614 2.4e-08 62.4 67 49.3
MELO3C018793.2 Cucumis melo HOM05D000538 ORTHO05D000614 2.4e-08 62.4 66 48.5
FAN02G3464 Fragaria x ananassa HOM05D000538 ORTHO05D000614 2.4e-08 62.4 76 43.4
Hma1.2p1_0439F.1_g153220 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 2.4e-08 62.4 69 46.4
Dinv15618 Davidia involucrata HOM05D000538 ORTHO05D000614 3.2e-08 62.0 59 50.8
Manes.16G016900 Manihot esculenta HOM05D000538 ORTHO05D000614 3.2e-08 62.0 67 47.8
PGR004G2796 Punica granatum HOM05D000538 ORTHO05D000614 3.2e-08 62.0 64 48.4
CSS0022087 Camellia sinensis var. sinensis HOM05D000538 ORTHO05D000614 4.1e-08 61.6 53 52.8
Prupe.7G003400 Prunus persica HOM05D000538 ORTHO05D000614 5.4e-08 61.2 58 48.3
Sabra16G0183500 Salix brachista HOM05D000538 ORTHO05D000614 5.4e-08 61.2 66 48.5
PGSC0003DMG400026193 Solanum tuberosum HOM05D000538 ORTHO05D012213 5.4e-08 61.2 50 50.0
TAR627G0243 Trochodendron aralioides HOM05D000538 ORTHO05D000614 5.4e-08 61.2 67 46.3
MSTRG.14651 Avicennia marina HOM05D000538 ORTHO05D000614 7.1e-08 60.8 67 47.8
CiPaw.09G080200 Carya illinoinensis HOM05D000538 ORTHO05D000614 7.1e-08 60.8 67 41.8
MELO3C032586.2 Cucumis melo HOM05D000538 ORTHO05D000614 7.1e-08 60.8 84 42.9
Gohir.A10G196200 Gossypium hirsutum HOM05D000538 ORTHO05D000614 7.1e-08 60.8 67 41.8
unitig_0.g2465 Utricularia gibba HOM05D000538 ORTHO05D000614 7.1e-08 60.8 67 47.8
Gohir.A13G018100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 9.2e-08 60.5 67 44.8
Nn1g03728 Nelumbo nucifera HOM05D000538 ORTHO05D000614 9.2e-08 60.5 67 44.8
Actinidia26954 Actinidia chinensis HOM05D000538 ORTHO05D000614 1.2e-07 60.1 67 47.8
Cfa014454 Carpinus fangiana HOM05D000538 ORTHO05D000614 1.2e-07 60.1 58 48.3
SGA_v2.0_scaffold185G40064 Striga asiatica HOM05D049804 ORTHO05D051417 1.2e-07 60.1 51 56.9
Gohir.A01G040800 Gossypium hirsutum HOM05D000538 ORTHO05D000614 1.6e-07 59.7 67 43.3
Gohir.D01G028300 Gossypium hirsutum HOM05D000538 ORTHO05D000614 1.6e-07 59.7 67 43.3
Gorai.002G037800 Gossypium raimondii HOM05D000538 ORTHO05D000614 1.6e-07 59.7 67 43.3
Gorai.013G021200 Gossypium raimondii HOM05D000538 ORTHO05D000614 1.6e-07 59.7 67 44.8
Manes.07G017600 Manihot esculenta HOM05D000538 ORTHO05D000614 1.6e-07 59.7 58 48.3
Sabra11G0087400 Salix brachista HOM05D000538 ORTHO05D000614 1.6e-07 59.7 66 47.0
Sed0007057 Sechium edule HOM05D000538 ORTHO05D000614 1.6e-07 59.7 66 47.0
Sopen04g029590 Solanum pennellii HOM05D000538 ORTHO05D000614 1.6e-07 59.7 67 46.3
PGSC0003DMG400030831 Solanum tuberosum HOM05D000538 ORTHO05D000614 1.6e-07 59.7 67 46.3
SGA_v2.0_scaffold12G06174 Striga asiatica HOM05D000538 ORTHO05D000614 1.6e-07 59.7 65 41.5
SGA_v2.0_scaffold185G40063 Striga asiatica HOM05D049804 ORTHO05D051417 1.6e-07 59.7 60 48.3
Ah.14g088490 Amaranthus hybridus HOM05D000538 ORTHO05D000614 2.1e-07 59.3 54 55.6
Duzib052G0757 Durio zibethinus HOM05D000538 ORTHO05D000614 2.1e-07 59.3 67 44.8
Gohir.D10G203100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.1e-07 59.3 67 40.3
Gorai.011G228000 Gossypium raimondii HOM05D000538 ORTHO05D000614 2.1e-07 59.3 67 40.3
Potri.007G119800 Populus trichocarpa HOM05D000538 ORTHO05D000614 2.1e-07 59.3 75 40.0
Prupe.4G029400 Prunus persica HOM05D000538 ORTHO05D000614 2.1e-07 59.3 55 49.1
Thecc.07G148000 Theobroma cacao HOM05D000538 ORTHO05D000614 2.1e-07 59.3 67 43.3
DCAR_007740 Daucus carota HOM05D000538 ORTHO05D000614 2.7e-07 58.9 63 46.0
CANSAT64G0769 Cannabis sativa HOM05D000538 ORTHO05D000614 3.5e-07 58.5 57 47.4
Gohir.D13G019101 Gossypium hirsutum HOM05D000538 ORTHO05D000614 3.5e-07 58.5 67 47.8
Sabra07G0097200 Salix brachista HOM05D000538 ORTHO05D000614 3.5e-07 58.5 75 40.0
Sabra11G0087800 Salix brachista HOM05D000538 ORTHO05D000614 3.5e-07 58.5 66 47.0
SGA_v2.0_scaffold62G21349 Striga asiatica HOM05D000538 ORTHO05D000614 3.5e-07 58.5 68 39.7
DCAR_024903 Daucus carota HOM05D000538 ORTHO05D000614 4.6e-07 58.2 67 41.8
CAN.G857.7 Capsicum annuum HOM05D000538 ORTHO05D000614 6.0e-07 57.8 66 43.9
Hma1.2p1_0613F.1_g189370 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 6.0e-07 57.8 67 44.8
Rhsim06G0156400 Rhododendron simsii HOM05D008818 ORTHO05D010237 6.0e-07 57.8 67 49.3
COL.COLO4_17402 Corchorus olitorius HOM05D000538 ORTHO05D000614 7.8e-07 57.4 67 41.8
Migut.M01263 Erythranthe guttata HOM05D000538 ORTHO05D000614 7.8e-07 57.4 67 44.8
Nitab4.5_0000786g0080 Nicotiana tabacum HOM05D000538 ORTHO05D000614 7.8e-07 57.4 53 49.1
Nitab4.5_0008264g0010 Nicotiana tabacum HOM05D000538 ORTHO05D000614 7.8e-07 57.4 53 49.1
Lj2C275T5 Lonicera japonica HOM05D000538 ORTHO05D000614 1.0e-06 57.0 66 40.9
Peaxi162Scf00030g00224 Petunia axillaris HOM05D000538 ORTHO05D000614 1.0e-06 57.0 53 50.9
SGA_v2.0_scaffold52G19023 Striga asiatica HOM05D000538 ORTHO05D000614 1.3e-06 56.6 68 41.2
SGA_v2.0_scaffold52G19080 Striga asiatica HOM05D000538 ORTHO05D000614 1.3e-06 56.6 68 41.2
SGA_v2.0_scaffold52G19155 Striga asiatica HOM05D000538 ORTHO05D000614 1.3e-06 56.6 68 41.2
TWI39G0036 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 1.3e-06 56.6 67 44.8
TAR629G2738 Trochodendron aralioides HOM05D000538 ORTHO05D000614 1.3e-06 56.6 67 47.8
Cfa016408 Carpinus fangiana HOM05D000538 ORTHO05D000614 1.7e-06 56.2 57 45.6
AUR62012581 Chenopodium quinoa HOM05D000538 ORTHO05D000614 2.3e-06 55.8 57 45.6
AUR62014620 Chenopodium quinoa HOM05D000538 ORTHO05D000614 2.3e-06 55.8 57 45.6
AUR62044486 Chenopodium quinoa HOM05D000538 ORTHO05D000614 2.3e-06 55.8 57 45.6
Ciclev10011975m.g Citrus clementina HOM05D000538 ORTHO05D000614 2.3e-06 55.8 59 44.1
Duzib213G0266 Durio zibethinus HOM05D000538 ORTHO05D000614 2.3e-06 55.8 67 40.3
ECA248G3523 Erigeron canadensis HOM05D000538 ORTHO05D000614 2.3e-06 55.8 67 44.8
Sp7g05370 Schrenkiella parvula HOM05D008078 ORTHO05D000614 2.3e-06 55.8 74 33.8
SpUn0053_0010 Schrenkiella parvula HOM05D008078 ORTHO05D000614 2.3e-06 55.8 74 33.8
ECA236G5057 Erigeron canadensis HOM05D000538 ORTHO05D000614 3.0e-06 55.5 57 42.1
QL05p077181 Quercus lobata HOM05D000538 ORTHO05D000614 3.0e-06 55.5 67 40.3
QL93p0073_1288 Quercus lobata HOM05D000538 ORTHO05D000614 3.0e-06 55.5 67 40.3
SalBow5G1539 Salvia bowleyana HOM05D000538 ORTHO05D000614 3.0e-06 55.5 67 41.8
Sp7g05720 Schrenkiella parvula HOM05D000538 ORTHO05D010263 3.0e-06 55.5 79 29.1
SGA_v2.0_scaffold52G19146 Striga asiatica HOM05D000538 ORTHO05D000614 3.0e-06 55.5 68 41.2
TWI38G2228 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 3.0e-06 55.5 70 44.3
Aa31LG2G9100 Aethionema arabicum HOM05D000538 ORTHO05D000614 3.9e-06 55.1 64 42.2
Duzib213G0460 Durio zibethinus HOM05D000538 ORTHO05D000614 3.9e-06 55.1 66 40.9
unitig_8.g3763 Utricularia gibba HOM05D000538 ORTHO05D000614 3.9e-06 55.1 67 43.3
AL6G24965 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 5.1e-06 54.7 67 35.8
Cpa.g.sc1622.1 Carica papaya HOM05D000538 ORTHO05D000614 5.1e-06 54.7 51 47.1
Oeu063070.2 Olea europaea HOM05D000538 ORTHO05D000614 5.1e-06 54.7 67 43.3
SGA_v2.0_scaffold62G21345 Striga asiatica HOM05D000538 ORTHO05D000614 5.1e-06 54.7 57 42.1
TAR633G0559 Trochodendron aralioides HOM05D000538 ORTHO05D000614 5.1e-06 54.7 56 42.9
Lsat_1_v5_gn_1_125380 Lactuca sativa HOM05D000538 ORTHO05D000614 6.6e-06 54.3 57 40.4
QL01p044471 Quercus lobata HOM05D000538 ORTHO05D000614 6.6e-06 54.3 67 38.8
SGA_v2.0_scaffold469G52068 Striga asiatica HOM05D000538 ORTHO05D000614 6.6e-06 54.3 68 36.8
BcaC08g44337 Brassica carinata HOM05D008078 ORTHO05D010263 8.6e-06 53.9 77 28.6
C06p17680 Brassica napus HOM05D008078 ORTHO05D010263 8.6e-06 53.9 77 28.6
BolC6t36966H Brassica oleracea HOM05D008078 ORTHO05D010263 8.6e-06 53.9 77 28.6
Haze_06686 Corylus avellana HOM05D000538 ORTHO05D000614 8.6e-06 53.9 57 43.9
Manes.17G030100 Manihot esculenta HOM05D000538 ORTHO05D000614 8.6e-06 53.9 58 44.8
Oeu058171.1 Olea europaea HOM05D000538 ORTHO05D000614 8.6e-06 53.9 57 45.6


User provided reference genes

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