Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 2094.3 1046 100.0
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1705.3 1049 80.9
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1650.6 1054 78.7
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1552.0 1045 74.0
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1516.1 1055 71.4
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1515.7 1055 71.1
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1500.7 1055 70.7
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1498.8 1055 70.2
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1494.2 1057 71.0
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1485.3 1055 70.1
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1484.9 1055 70.6
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1483.4 1055 69.7
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1482.6 1053 70.0
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1481.5 1054 69.8
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1481.1 1051 70.1
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1480.7 1055 70.9
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1480.3 1057 69.5
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1478.4 1056 69.8
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1477.2 1053 71.0
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1476.5 1059 69.2
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1474.1 1055 70.4
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1473.4 1054 69.3
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1055 70.4
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1057 69.0
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1054 69.5
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1465.7 1058 69.4
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1464.1 1053 69.2
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1463.4 1057 68.6
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1461.8 1054 68.9
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1456.8 1054 69.2
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1456.4 1054 68.9
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1456.4 1057 68.3
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1456.4 1053 69.2
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1455.7 1120 65.8
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1453.3 1054 68.5
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1453.0 1060 68.6
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1452.6 1054 68.4
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 1060 68.3
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 1053 68.5
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1449.9 1053 68.9
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1448.7 1051 68.4
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1446.8 1145 64.9
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1446.4 1052 67.9
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1445.6 1054 69.3
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1441.0 1037 69.6
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1441.0 1054 67.8
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1438.7 1055 67.4
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1438.3 1052 68.2
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1437.6 1059 67.8
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1436.8 1053 67.5
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1434.5 1051 68.5
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1432.2 1040 69.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1429.8 1140 64.2
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1427.2 1050 68.3
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1426.0 1072 66.6
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1425.2 1072 66.6
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1424.8 1050 68.9
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1422.9 1058 67.3
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1422.5 1061 68.1
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1420.6 1054 68.6
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1417.9 1063 66.2
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1412.9 1055 66.0
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1411.0 1056 65.6
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1406.7 1054 67.0
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1403.3 1053 66.9
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1401.7 1058 65.3
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1399.8 1055 65.8
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1394.8 1053 66.2
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1391.3 960 72.7
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1389.4 1056 65.2
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1388.2 1057 65.9
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1387.1 1056 65.5
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1384.4 1131 63.0
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1380.2 1054 65.9
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1376.7 1056 64.8
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1375.9 1056 64.7
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1372.5 1055 65.4
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1372.1 1048 65.7
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1359.4 1057 64.1
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1358.6 1065 64.0
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1355.9 1098 62.6
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1328.2 977 67.7
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1322.4 945 69.9
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1321.2 1060 62.6
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1320.4 1063 63.3
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1318.1 1059 62.8
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1317.0 1264 54.7
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1270.8 844 74.8
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1228.8 863 71.4
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1204.1 845 70.7
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1202.2 958 66.6
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1130.2 800 69.6
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1099.7 1074 53.2
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1096.6 788 69.0
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 0.0e+00 1077.8 1053 52.1
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 2.8e-298 1028.9 784 65.6
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 4.9e-295 1018.1 1073 51.0
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.9e-270 936.4 772 61.3
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.4e-257 893.6 633 72.2
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.9e-231 806.2 518 76.6
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 3.0e-228 796.2 657 62.3
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 3.7e-226 789.3 951 48.8
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 3.6e-221 772.7 517 71.4
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.9e-210 736.5 696 55.3
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.3e-202 711.1 448 75.7
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 5.4e-201 705.7 448 75.0
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 1.7e-199 700.7 453 74.4
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 9.5e-198 694.9 450 73.3
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 2.3e-196 690.3 471 71.3
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 4.4e-195 686.0 449 72.2
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.3e-194 684.5 455 71.4
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.2e-192 677.9 450 72.0
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 6.0e-192 675.6 471 69.0
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 6.2e-189 665.6 459 70.2
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 6.0e-184 649.0 449 69.5
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.4e-177 627.9 461 66.2
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.6e-168 597.8 428 68.7
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 5.8e-163 579.3 449 65.3
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 4.2e-161 573.2 449 64.6
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.3e-157 561.6 400 70.0
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.6e-157 561.2 405 67.9
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 1.8e-156 557.8 459 61.4
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.3e-149 535.0 366 70.2
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.2e-146 524.2 366 68.3
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 4.2e-145 520.0 614 49.2
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 5.5e-145 519.6 1110 31.7
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 6.3e-117 426.4 267 77.9
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 2.2e-114 417.9 250 83.2
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.3e-109 402.1 271 75.3
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 2.7e-107 394.4 286 71.0
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 2.0e-102 378.3 318 59.7
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 5.7e-102 376.7 238 78.2
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.2e-99 369.0 213 84.5
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 5.0e-98 363.6 241 77.6
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 2.5e-97 361.3 268 71.3
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 3.6e-72 277.7 156 84.6
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 4.6e-67 260.8 210 61.9
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.2e-62 246.1 206 60.2
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 1.2e-62 246.1 286 46.5
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.3e-45 189.5 123 71.5
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 3.0e-42 178.3 171 57.9
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.5e-41 176.0 156 57.7
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.2e-38 166.4 155 56.1
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 2.1e-35 155.6 177 48.6
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 7.4e-33 147.1 110 65.5
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 3.4e-30 138.3 137 51.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.3e-29 136.3 85 72.9
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.3e-29 136.3 137 51.8
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 7.9e-27 127.1 106 61.3
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 1.4e-26 126.3 97 63.9
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 1.8e-26 125.9 83 66.3
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.3e-21 109.8 96 58.3
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 3.8e-21 108.2 54 88.9
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 3.6e-19 101.7 96 55.2
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 5.2e-18 97.8 77 62.3
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 1.7e-16 92.8 81 55.6
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 4.8e-16 91.3 58 65.5
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 6.3e-16 90.9 77 58.4
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 2.6e-14 85.5 55 70.9
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 3.5e-14 85.1 53 79.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 8.5e-13 80.5 74 55.4
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 1.1e-12 80.1 54 66.7
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 9.4e-12 77.0 74 51.4
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 4.0e-10 71.6 41 80.5
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.2e-09 70.1 76 48.7
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 2.0e-09 69.3 44 75.0
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 2.6e-09 68.9 36 83.3
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.3e-09 68.6 74 48.6
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 4.8e-08 64.7 48 66.7


User provided reference genes

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