Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G5521 Salvia bowleyana HOM05D002228 ORTHO05D002347 1.9e-47 192.2 99 100.0
Oeu008641.1 Olea europaea HOM05D002228 ORTHO05D002347 4.7e-14 81.3 58 72.4
MSTRG.20196 Avicennia marina HOM05D002228 ORTHO05D002347 1.8e-13 79.3 57 75.4
Migut.B00404 Erythranthe guttata HOM05D002228 ORTHO05D002347 1.8e-13 79.3 57 73.7
unitig_21.g20727 Utricularia gibba HOM05D002228 ORTHO05D002347 3.1e-13 78.6 57 75.4
Oeu013763.2 Olea europaea HOM05D002228 ORTHO05D002347 1.5e-12 76.3 57 71.9
SGA_v2.0_scaffold32G13031 Striga asiatica HOM05D002228 ORTHO05D002347 1.5e-12 76.3 57 70.2
Cc02_g19450 Coffea canephora HOM05D002228 ORTHO05D002347 3.7e-11 71.6 57 66.7
Psat6g216280 Pisum sativum HOM05D002228 ORTHO05D002347 3.7e-11 71.6 57 68.4
Ca_11056_v3 Cicer arietinum L. HOM05D002228 ORTHO05D002347 1.1e-10 70.1 57 66.7
Actinidia34386 Actinidia chinensis HOM05D002228 ORTHO05D002347 1.4e-10 69.7 57 64.9
Lj5g0017624 Lotus japonicus HOM05D002228 ORTHO05D002347 1.4e-10 69.7 57 64.9
Medtr1g107015 Medicago truncatula HOM05D002228 ORTHO05D002347 1.4e-10 69.7 57 64.9
TPR.G27128 Trifolium pratense HOM05D002228 ORTHO05D002347 1.4e-10 69.7 57 64.9
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.9e-10 69.3 57 66.7
Glyma.10G260400 Glycine max HOM05D002228 ORTHO05D002347 2.4e-10 68.9 57 66.7
CSS0008847 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.2e-10 68.6 57 64.9
CSS0032057 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.2e-10 68.6 57 64.9
Thecc.02G111700 Theobroma cacao HOM05D002228 ORTHO05D002347 3.2e-10 68.6 57 66.7
ECA240G0303 Erigeron canadensis HOM05D002228 ORTHO05D002347 4.1e-10 68.2 57 63.2
Duzib052G0045 Durio zibethinus HOM05D002228 ORTHO05D002347 5.4e-10 67.8 57 64.9
VMungo0720G0584 Vigna mungo HOM05D002228 ORTHO05D002347 5.4e-10 67.8 57 64.9
Duzib132G1185 Durio zibethinus HOM05D002228 ORTHO05D002347 7.1e-10 67.4 57 64.9
Glyma.20G130800 Glycine max HOM05D002228 ORTHO05D002347 7.1e-10 67.4 57 64.9
vmacro01985 Vaccinium macrocarpon HOM05D002228 ORTHO05D002347 7.1e-10 67.4 57 63.2
ClCG05G010380 Citrullus lanatus HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 63.2
COL.COLO4_32568 Corchorus olitorius HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 64.9
MELO3C019554.2 Cucumis melo HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 63.2
CsaV3_3G018100 Cucumis sativus L. HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 63.2
DCAR_001661 Daucus carota HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 64.9
Gohir.A03G185400 Gossypium hirsutum HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 64.9
Gohir.D02G206824 Gossypium hirsutum HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 64.9
Gorai.005G234300 Gossypium raimondii HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 64.9
Zm00001eb293860 Zea mays HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 59.6
Zm00001eb293870 Zea mays HOM05D002228 ORTHO05D002347 9.2e-10 67.0 57 59.6
Dinv15776 Davidia involucrata HOM05D002228 ORTHO05D002347 1.6e-09 66.2 57 66.7
HanXRQChr03g0068781 Helianthus annuus HOM05D002228 ORTHO05D002347 1.6e-09 66.2 57 61.4
Phvul.007G041800 Phaseolus vulgaris HOM05D002228 ORTHO05D002347 1.6e-09 66.2 57 61.4
CAN.G606.22 Capsicum annuum HOM05D002228 ORTHO05D002347 2.1e-09 65.9 57 63.2
Lalb_Chr02g0145201 Lupinus albus HOM05D002228 ORTHO05D002347 2.1e-09 65.9 57 63.2
Nitab4.5_0001480g0090 Nicotiana tabacum HOM05D002228 ORTHO05D002347 2.1e-09 65.9 57 63.2
Nitab4.5_0003699g0040 Nicotiana tabacum HOM05D002228 ORTHO05D002347 2.1e-09 65.9 57 63.2
Eucgr.G01324 Eucalyptus grandis HOM05D002228 ORTHO05D002347 2.7e-09 65.5 57 61.4
TWI79G1784 Tripterygium wilfordii HOM05D002228 ORTHO05D002347 2.7e-09 65.5 57 64.9
arahy.Tifrunner.gnm1.ann1.014EBR Arachis hypogaea HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 61.4
arahy.Tifrunner.gnm1.ann1.FWIG8T Arachis hypogaea HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 61.4
Gohir.A04G119300 Gossypium hirsutum HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 61.4
Gohir.D04G160900 Gossypium hirsutum HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 61.4
Gorai.012G148900 Gossypium raimondii HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 61.4
HanXRQChr09g0251051 Helianthus annuus HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 57.9
Sed0012074 Sechium edule HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 61.4
Solyc01g107410.3 Solanum lycopersicum HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 63.2
Sopen01g049650 Solanum pennellii HOM05D002228 ORTHO05D002347 3.5e-09 65.1 57 63.2
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.6e-09 64.7 57 61.4
Gohir.A12G020900 Gossypium hirsutum HOM05D002228 ORTHO05D002347 4.6e-09 64.7 57 61.4
Gohir.D12G021200 Gossypium hirsutum HOM05D002228 ORTHO05D002347 4.6e-09 64.7 57 61.4
Gorai.008G021500 Gossypium raimondii HOM05D002228 ORTHO05D002347 4.6e-09 64.7 57 61.4
Hma1.2p1_1023F.1_g248980 Hydrangea macrophylla HOM05D002228 ORTHO05D002347 4.6e-09 64.7 57 64.9
Manes.07G066300 Manihot esculenta HOM05D002228 ORTHO05D002347 4.6e-09 64.7 57 63.2
BcaC09g48908 Brassica carinata HOM05D002228 ORTHO05D002347 6.0e-09 64.3 59 57.6
MD05G1092200 Malus domestica HOM05D002228 ORTHO05D002347 6.0e-09 64.3 57 63.2
Zm00001eb353320 Zea mays HOM05D002228 ORTHO05D002347 6.0e-09 64.3 57 56.1
AUR62028683 Chenopodium quinoa HOM05D002228 ORTHO05D002347 7.8e-09 63.9 57 61.4
Peaxi162Scf00016g02512 Petunia axillaris HOM05D002228 ORTHO05D002347 7.8e-09 63.9 57 61.4
Prupe.8G137800 Prunus persica HOM05D002228 ORTHO05D002347 7.8e-09 63.9 57 63.2
Sed0013880 Sechium edule HOM05D002228 ORTHO05D002347 7.8e-09 63.9 57 59.6
PGR042G0497 Punica granatum HOM05D002228 ORTHO05D002347 1.0e-08 63.5 57 61.4
Zm00001eb153100 Zea mays HOM05D002228 ORTHO05D002347 1.0e-08 63.5 57 57.9
Zm00001eb371020 Zea mays HOM05D002228 ORTHO05D002347 1.0e-08 63.5 57 57.9
Ah.11g050960 Amaranthus hybridus HOM05D000201 ORTHO05D000415 1.3e-08 63.2 57 59.6
DCAR_029097 Daucus carota HOM05D002228 ORTHO05D002347 1.3e-08 63.2 57 57.9
Carub.0003s1932 Capsella rubella HOM05D002228 ORTHO05D002347 1.7e-08 62.8 57 63.2
RcHm_v2.0_Chr6g0254411 Rosa chinensis HOM05D002228 ORTHO05D002347 1.7e-08 62.8 57 61.4
TAR376G0176 Trochodendron aralioides HOM05D002228 ORTHO05D002347 1.7e-08 62.8 57 61.4
FvH4_2g04760 Fragaria vesca HOM05D002228 ORTHO05D002347 2.3e-08 62.4 57 63.2
FAN15G2022 Fragaria x ananassa HOM05D002228 ORTHO05D002347 2.3e-08 62.4 57 63.2
FAN20G1217 Fragaria x ananassa HOM05D002228 ORTHO05D002347 2.3e-08 62.4 57 63.2
FAN24G2621 Fragaria x ananassa HOM05D002228 ORTHO05D002347 2.3e-08 62.4 57 63.2
MBI16_g06971_MAGBIO Magnolia biondii HOM05D002228 ORTHO05D002347 2.3e-08 62.4 57 57.9
AL3G32920 Arabidopsis lyrata HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 61.4
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 59.6
CANSAT25G1410 Cannabis sativa HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 61.4
CDE02G2825 Ceratophyllum demersum HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 56.1
AUR62008106 Chenopodium quinoa HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 59.6
FAN27G3118 Fragaria x ananassa HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 63.2
QL11p032628 Quercus lobata HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 61.4
Sc18g0005540 Simmondsia chinensis HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 63.2
GSVIVG01037894001 Vitis vinifera HOM05D002228 ORTHO05D002347 3.0e-08 62.0 57 59.6
AT3G19510 Arabidopsis thaliana HOM05D002228 ORTHO05D002347 3.9e-08 61.6 57 61.4
Cfa004608 Carpinus fangiana HOM05D002228 ORTHO05D002347 5.1e-08 61.2 57 61.4
Ciclev10027725m.g Citrus clementina HOM05D002228 ORTHO05D002347 5.1e-08 61.2 57 63.2
MD10G1100500 Malus domestica HOM05D002228 ORTHO05D002347 5.1e-08 61.2 57 61.4
CiPaw.06G168300 Carya illinoinensis HOM05D002228 ORTHO05D002347 6.6e-08 60.8 57 61.4
Atru.chr5.2440 Acer truncatum HOM05D002228 ORTHO05D002347 8.6e-08 60.5 57 59.6
Sabra09G0071600 Salix brachista HOM05D002228 ORTHO05D002347 8.6e-08 60.5 57 56.1
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 1.1e-07 60.1 57 57.9
Haze_10204 Corylus avellana HOM05D002228 ORTHO05D002347 1.1e-07 60.1 57 59.6
Lsat_1_v5_gn_9_111961 Lactuca sativa HOM05D002228 ORTHO05D002347 1.1e-07 60.1 57 52.6
Manes.10G075000 Manihot esculenta HOM05D002228 ORTHO05D002347 1.1e-07 60.1 57 59.6
Nn5g30462 Nelumbo nucifera HOM05D002228 ORTHO05D002347 1.1e-07 60.1 57 56.1
Potri.001G298400 Populus trichocarpa HOM05D002228 ORTHO05D002347 1.1e-07 60.1 57 56.1
Sabra16G0187200 Salix brachista HOM05D002228 ORTHO05D002347 1.1e-07 60.1 57 54.4
Hund00160 Selenicereus undatus HOM05D002228 ORTHO05D002347 1.1e-07 60.1 57 57.9
Os06g0229300 Oryza sativa ssp. japonica HOM05D002228 ORTHO05D002347 1.5e-07 59.7 57 56.1
Potri.009G093000 Populus trichocarpa HOM05D002228 ORTHO05D002347 1.5e-07 59.7 57 56.1
A01p35200 Brassica napus HOM05D002228 ORTHO05D002347 1.9e-07 59.3 57 56.1
BraA01t03601Z Brassica rapa HOM05D002228 ORTHO05D002347 1.9e-07 59.3 57 56.1
CARHR094940 Cardamine hirsuta HOM05D002228 ORTHO05D002347 1.9e-07 59.3 57 56.1
Thhalv10022305m.g Eutrema salsugineum HOM05D002228 ORTHO05D002347 1.9e-07 59.3 57 59.6
HPP92_018450 Vanilla planifolia HOM05D002228 ORTHO05D002347 1.9e-07 59.3 56 51.8
Aa31LG8G6270 Aethionema arabicum HOM05D002228 ORTHO05D002347 2.5e-07 58.9 57 59.6
Aqoxy6G02831 Aquilegia oxysepala HOM05D002228 ORTHO05D002347 3.3e-07 58.5 57 56.1
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 3.3e-07 58.5 57 56.1
C01p44620 Brassica napus HOM05D002228 ORTHO05D002347 3.3e-07 58.5 57 56.1
BolC1t04430H Brassica oleracea HOM05D002228 ORTHO05D002347 3.3e-07 58.5 57 56.1
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 4.3e-07 58.2 57 56.1
BolC5t33278H Brassica oleracea HOM05D002228 ORTHO05D002347 4.3e-07 58.2 57 56.1
EL10Ac5g10614 Beta vulgaris HOM05D002228 ORTHO05D002347 5.6e-07 57.8 56 57.1
Rhsim11G0155600 Rhododendron simsii HOM05D002228 ORTHO05D002347 5.6e-07 57.8 50 58.0
RhsimUnG0126800 Rhododendron simsii HOM05D002228 ORTHO05D002347 5.6e-07 57.8 50 58.0
C05p45530 Brassica napus HOM05D002228 ORTHO05D002347 7.3e-07 57.4 57 56.1
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 7.3e-07 57.4 57 56.1
PSO541G4090 Papaver somniferum HOM05D002228 ORTHO05D002347 1.2e-06 56.6 57 52.6
PSO675G2637 Papaver somniferum HOM05D002228 ORTHO05D002347 1.2e-06 56.6 57 52.6
BcaC05g28469 Brassica carinata HOM05D002228 ORTHO05D002347 2.1e-06 55.8 57 54.4
BcaB06g26011 Brassica carinata HOM05D002228 ORTHO05D002347 3.6e-06 55.1 57 54.4


User provided reference genes

Program Settings