Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 3.5e-111 405.2 241 100.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 4.0e-99 365.2 241 89.2
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 5.8e-98 361.3 241 90.0
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 7.5e-98 360.9 241 87.6
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.9e-96 356.3 241 87.6
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.2e-96 355.5 241 87.1
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.2e-96 354.0 241 86.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 2.0e-95 352.8 241 85.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 3.5e-95 352.1 243 85.6
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.3e-94 350.1 241 85.9
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.7e-94 349.7 241 85.5
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.3e-94 349.4 242 76.9
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.0e-94 348.2 242 80.6
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 5.0e-94 348.2 242 80.2
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 8.6e-94 347.4 239 75.7
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.5e-93 346.7 241 83.8
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 4.3e-93 345.1 240 78.3
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 5.6e-93 344.7 240 85.0
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.2e-92 343.6 242 80.6
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 3.6e-92 342.0 241 83.4
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.1e-92 340.9 241 78.4
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.1e-91 340.5 241 84.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.4e-91 340.1 241 82.6
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.8e-91 339.7 242 78.5
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.8e-91 339.7 242 78.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 6.8e-91 337.8 239 84.9
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.2e-90 337.0 239 84.1
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.5e-90 336.7 239 83.3
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.5e-90 336.7 241 78.0
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.5e-90 336.7 239 82.0
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.0e-90 336.3 239 83.3
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.6e-90 335.9 228 88.6
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 4.4e-90 335.1 239 79.5
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 4.4e-90 335.1 241 79.7
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 9.8e-90 334.0 241 78.4
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 9.8e-90 334.0 240 72.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.3e-89 333.6 240 76.2
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.3e-89 333.6 241 73.4
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 80.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 80.1
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 80.5
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.7e-89 333.2 202 83.7
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.7e-89 333.2 239 82.8
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.9e-89 332.4 206 83.0
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.9e-89 332.4 241 80.1
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.9e-89 332.4 237 73.8
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 3.7e-89 332.0 238 81.5
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 4.9e-89 331.6 199 85.4
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 6.4e-89 331.3 239 78.7
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 6.4e-89 331.3 241 80.9
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 6.4e-89 331.3 236 83.9
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.9e-88 329.7 240 71.2
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.2e-88 328.9 241 76.3
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 4.1e-88 328.6 239 83.3
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 7.1e-88 327.8 206 81.1
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.1e-88 327.8 203 81.8
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 7.1e-88 327.8 236 80.1
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 9.2e-88 327.4 204 81.4
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 9.2e-88 327.4 204 81.4
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.2e-87 327.0 240 70.4
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.2e-87 327.0 239 79.5
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.6e-87 326.6 245 70.2
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 3.5e-87 325.5 203 81.3
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 6.0e-87 324.7 228 81.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.0e-86 323.9 240 80.8
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.3e-86 322.8 235 79.1
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 3.0e-86 322.4 240 70.8
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 3.0e-86 322.4 202 80.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 3.9e-86 322.0 198 82.3
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.1e-86 321.6 241 69.3
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 5.1e-86 321.6 236 81.8
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 6.6e-86 321.2 240 70.4
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 8.6e-86 320.9 203 79.3
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.5e-85 320.1 241 78.8
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 4.3e-85 318.5 202 80.2
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.3e-85 318.5 203 80.3
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 9.5e-85 317.4 201 81.1
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-84 317.0 204 77.9
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 1.6e-84 316.6 239 70.3
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.8e-84 315.8 204 78.4
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 3.6e-84 315.5 241 78.0
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 8.1e-84 314.3 204 78.9
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-83 313.9 202 78.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.1e-83 313.9 202 78.7
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.8e-83 313.2 240 70.4
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 2.3e-83 312.8 240 70.0
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.2e-83 311.6 194 82.5
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.8e-83 311.2 240 69.6
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.9e-83 310.8 240 69.6
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.4e-82 308.9 240 69.2
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 5.8e-82 308.1 207 79.2
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.7e-81 306.6 205 77.6
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 8.4e-81 304.3 241 67.2
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.9e-80 303.1 204 75.0
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 5.4e-80 301.6 244 73.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.6e-79 300.1 241 67.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.1e-79 299.7 203 74.9
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.7e-79 299.3 202 75.2
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 4.6e-79 298.5 227 74.0
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 6.0e-79 298.1 191 78.0
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 2.3e-78 296.2 204 74.5
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.3e-78 296.2 204 76.0
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 3.9e-78 295.4 203 73.9
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 6.6e-78 294.7 210 83.3
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 5.6e-77 291.6 200 75.5
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 7.3e-77 291.2 200 75.5
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 9.6e-77 290.8 202 73.3
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.2e-76 290.4 202 74.3
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 6.2e-76 288.1 195 75.4
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.8e-75 286.6 205 72.2
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 3.1e-75 285.8 205 71.7
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 4.0e-75 285.4 205 72.7
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 4.0e-75 285.4 205 72.2
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.5e-74 283.5 182 79.1
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.3e-73 280.4 205 70.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.3e-73 280.4 205 70.2
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.2e-73 279.6 205 70.2
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.9e-73 279.3 205 70.2
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.9e-73 279.3 205 70.2
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 4.2e-72 275.4 205 70.2
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 9.3e-72 274.2 178 77.0
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 1.9e-69 266.5 191 72.8
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.3e-69 265.8 202 66.3
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 9.6e-69 264.2 191 69.6
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.1e-61 240.7 191 63.9
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 8.1e-60 234.6 151 77.5
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 3.4e-58 229.2 191 64.9
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 6.7e-54 214.9 204 59.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 4.3e-53 212.2 204 57.4
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 4.9e-49 198.7 132 75.0
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-45 187.6 133 74.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 5.7e-45 185.3 110 77.3
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.2e-39 167.5 174 51.1
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 2.7e-39 166.4 204 51.5
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.5e-37 159.8 171 49.7
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.2e-34 151.0 102 71.6
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 5.7e-29 132.1 182 42.9
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-26 124.4 80 71.2
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 5.5e-24 115.5 91 65.9
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 5.3e-19 99.0 181 33.7
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.2e-15 87.8 53 84.9
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.0e-14 84.7 53 77.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.5e-13 80.9 90 54.4
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.1e-11 74.7 180 30.0


User provided reference genes

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