Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 0.0e+00 1164.1 589 100.0
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 5.0e-236 821.2 570 74.9
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 1.3e-228 796.6 635 64.1
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 2.9e-228 795.4 635 63.5
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 6.1e-226 787.7 596 66.8
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 7.4e-224 780.8 569 70.5
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 4.1e-222 775.0 634 62.9
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 7.0e-222 774.2 622 63.3
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 4.2e-219 765.0 571 68.3
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 5.5e-219 764.6 552 69.4
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 6.7e-217 757.7 571 67.3
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.2e-216 756.9 571 67.4
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.2e-216 756.9 571 67.4
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.5e-216 756.5 571 68.5
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 5.7e-216 754.6 571 68.5
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 5.7e-216 754.6 571 68.1
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 1.3e-215 753.4 571 68.1
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 1.7e-215 753.1 572 67.0
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 8.2e-215 750.7 569 67.3
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 1.1e-214 750.4 570 66.3
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 1.4e-214 750.0 572 66.3
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 3.1e-214 748.8 567 66.3
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 7.0e-214 747.7 569 67.1
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 1.6e-213 746.5 569 67.5
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.0e-213 746.1 571 66.5
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.0e-213 746.1 571 66.2
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 4.5e-213 745.0 571 66.7
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 7.7e-213 744.2 638 60.2
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 7.7e-213 744.2 568 66.2
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 1.0e-212 743.8 570 66.1
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 1.3e-212 743.4 570 66.0
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 2.9e-212 742.3 567 67.0
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 2.9e-212 742.3 568 66.4
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 5.0e-212 741.5 571 67.1
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 5.0e-212 741.5 571 66.7
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 5.0e-212 741.5 571 65.8
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 6.5e-212 741.1 571 66.0
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 7.2e-211 737.6 568 66.0
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 9.4e-211 737.3 571 65.5
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 3.6e-210 735.3 570 64.9
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 1.4e-209 733.4 588 64.3
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.4e-209 733.4 578 64.4
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 1.8e-209 733.0 568 66.5
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 2.3e-209 732.6 660 57.9
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 6.8e-209 731.1 571 65.0
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 1.2e-208 730.3 571 65.8
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 3.4e-208 728.8 559 67.1
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.4e-208 728.8 578 63.7
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 7.5e-208 727.6 559 67.1
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 7.5e-208 727.6 571 65.7
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 1.4e-206 723.4 571 65.0
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 1.8e-206 723.0 571 65.0
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 9.1e-206 720.7 571 64.8
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 1.2e-205 720.3 660 57.1
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 4.5e-205 718.4 571 64.6
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.5e-205 718.4 586 62.6
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 4.5e-205 718.4 572 63.5
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 5.9e-205 718.0 572 63.5
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 1.3e-204 716.8 571 64.4
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 2.3e-204 716.1 569 63.6
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 3.3e-203 712.2 568 63.4
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 9.5e-203 710.7 645 58.4
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 3.6e-202 708.8 571 64.1
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 1.4e-201 706.8 569 63.1
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 1.5e-200 703.4 569 62.9
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.6e-200 702.6 574 62.2
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 4.4e-200 701.8 569 62.6
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 9.8e-200 700.7 569 62.7
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 3.7e-199 698.7 568 61.6
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 4.9e-199 698.4 574 62.4
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.1e-198 697.2 569 62.6
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 3.1e-198 695.7 569 62.4
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 7.0e-198 694.5 569 62.0
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 7.0e-198 694.5 569 62.0
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 7.0e-198 694.5 569 62.0
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 9.2e-198 694.1 569 62.4
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 9.2e-198 694.1 568 62.0
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 5.9e-197 691.4 569 61.9
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 7.8e-197 691.0 569 62.4
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.0e-196 690.6 569 61.9
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 1.3e-196 690.3 569 61.9
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 6.6e-196 688.0 609 59.6
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 5.6e-195 684.9 558 61.6
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.2e-194 683.7 556 62.6
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 2.1e-194 682.9 571 61.8
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 4.4e-192 675.2 613 57.9
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 5.8e-192 674.9 566 62.4
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 2.2e-191 672.9 567 59.8
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.2e-186 657.1 531 63.3
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 1.4e-185 653.7 610 58.4
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 4.1e-182 642.1 559 61.2
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 2.0e-181 639.8 570 58.4
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.3e-179 632.5 571 58.1
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 7.3e-179 631.3 444 68.7
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 9.5e-179 630.9 548 59.7
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 3.1e-177 625.9 566 59.7
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 5.2e-177 625.2 550 59.8
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 1.3e-175 620.5 571 57.3
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 4.7e-170 602.1 569 55.4
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 1.1e-166 590.9 533 59.1
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 3.1e-161 572.8 567 51.7
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.4e-142 510.0 659 45.7
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 2.2e-135 486.9 589 45.7
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 1.8e-132 477.2 578 45.8
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 2.7e-125 453.4 272 77.9
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 7.9e-125 451.8 579 44.2
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 5.1e-124 449.1 422 56.9
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.5e-123 447.6 446 48.9
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 1.4e-118 431.0 454 54.4
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 2.1e-117 427.2 303 67.3
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.3e-111 407.9 370 60.5
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 4.7e-93 346.3 525 39.6
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 3.4e-91 340.1 301 65.1
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 9.5e-86 322.0 311 54.3
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 8.1e-61 239.2 145 77.2
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.4e-60 238.4 157 64.3
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 9.9e-59 232.3 195 57.9
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 6.4e-58 229.6 606 29.2
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.2e-53 215.3 196 57.1
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.8e-52 211.5 126 74.6
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 1.5e-46 191.8 686 26.4
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 2.5e-46 191.0 690 27.4
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 4.4e-43 180.3 146 61.6
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 5.8e-43 179.9 481 29.1
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 1.3e-31 142.1 123 54.5
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 8.7e-31 139.4 123 52.0
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 4.8e-29 133.7 113 55.8
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 2.4e-28 131.3 102 71.6
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 3.4e-27 127.5 94 74.5
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 2.9e-26 124.4 127 48.8
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 6.0e-24 116.7 91 72.5
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 1.0e-23 115.9 85 63.5
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 1.3e-23 115.5 90 73.3
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 1.3e-23 115.5 90 73.3
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 1.9e-22 111.7 68 79.4
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 9.6e-22 109.4 90 71.1
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 6.2e-21 106.7 129 44.2
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 1.4e-20 105.5 162 43.8
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 4.2e-17 94.0 57 70.2
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 4.2e-17 94.0 71 71.8
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 9.3e-17 92.8 85 62.4
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 4.6e-16 90.5 90 47.8
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.0e-15 89.4 88 50.0
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.0e-15 87.8 51 82.4
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 6.7e-15 86.7 58 75.9
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 4.3e-14 84.0 61 57.4
Gorai.007G229200 Gossypium raimondii HOM05D004755 ORTHO05D036105 2.2e-13 81.6 57 73.7
Gohir.A11G209850 Gossypium hirsutum HOM05D004755 ORTHO05D036105 3.7e-13 80.9 57 71.9
Gohir.D11G213250 Gossypium hirsutum HOM05D004755 ORTHO05D036105 2.4e-12 78.2 57 71.9
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 7.2e-09 66.6 273 28.9
CARHR219250 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.8e-07 62.0 64 46.9
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 2.3e-07 61.6 48 58.3
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 4.3e-06 57.4 201 21.9
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 4.3e-06 57.4 41 65.9


User provided reference genes

Program Settings