Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G0311 Salvia bowleyana HOM05D003445 ORTHO05D050775 2.1e-160 568.9 280 100.0
SGA_v2.0_scaffold101G29793 Striga asiatica HOM05D003445 ORTHO05D050775 1.9e-12 77.4 96 45.8
Dinv31260 Davidia involucrata HOM05D003445 ORTHO05D004114 5.3e-10 69.3 46 76.1
vmacro10262 Vaccinium macrocarpon HOM05D003445 ORTHO05D004114 4.4e-09 66.2 36 88.9
Sc09g0005840 Simmondsia chinensis HOM05D003445 ORTHO05D004114 7.6e-09 65.5 36 86.1
Aqoxy1G01069 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 9.9e-09 65.1 36 86.1
Nn6g35202 Nelumbo nucifera HOM05D003445 ORTHO05D004114 9.9e-09 65.1 36 86.1
Potri.008G030700 Populus trichocarpa HOM05D003445 ORTHO05D004114 9.9e-09 65.1 36 83.3
Sabra08G0020500 Salix brachista HOM05D003445 ORTHO05D004114 9.9e-09 65.1 36 83.3
TAR633G1158 Trochodendron aralioides HOM05D003445 ORTHO05D004114 9.9e-09 65.1 36 86.1
Dinv36360 Davidia involucrata HOM05D003445 ORTHO05D004114 1.3e-08 64.7 36 86.1
Rhsim09G0145400 Rhododendron simsii HOM05D003445 ORTHO05D004114 1.3e-08 64.7 36 86.1
TAR369G0057 Trochodendron aralioides HOM05D003445 ORTHO05D004114 1.7e-08 64.3 36 83.3
TAR623G1080 Trochodendron aralioides HOM05D003445 ORTHO05D004114 1.7e-08 64.3 36 83.3
Lj3C935G7 Lonicera japonica HOM05D003445 ORTHO05D004114 2.2e-08 63.9 36 86.1
SalBow6G4419 Salvia bowleyana HOM05D003445 ORTHO05D004114 2.2e-08 63.9 36 86.1
Cpa.g.sc53.166 Carica papaya HOM05D003445 ORTHO05D004114 2.9e-08 63.5 36 83.3
Cfa001777 Carpinus fangiana HOM05D003445 ORTHO05D004114 2.9e-08 63.5 36 83.3
Haze_16775 Corylus avellana HOM05D003445 ORTHO05D004114 2.9e-08 63.5 36 83.3
Hma1.2p1_1009F.1_g247280 Hydrangea macrophylla HOM05D003445 ORTHO05D004114 2.9e-08 63.5 36 86.1
MSTRG.27501 Avicennia marina HOM05D003445 ORTHO05D004114 3.8e-08 63.2 36 83.3
CSS0030750 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 3.8e-08 63.2 36 80.6
Migut.F01911 Erythranthe guttata HOM05D003445 ORTHO05D004114 3.8e-08 63.2 36 83.3
Potri.010G230500 Populus trichocarpa HOM05D003445 ORTHO05D004114 3.8e-08 63.2 36 80.6
Sabra10G0178800 Salix brachista HOM05D003445 ORTHO05D004114 3.8e-08 63.2 36 80.6
Atru.chr12.903 Acer truncatum HOM05D003445 ORTHO05D004114 4.9e-08 62.8 36 77.8
MELO3C012385.2 Cucumis melo HOM05D003445 ORTHO05D004114 4.9e-08 62.8 36 80.6
CsaV3_5G035820 Cucumis sativus L. HOM05D003445 ORTHO05D004114 4.9e-08 62.8 36 80.6
Gorai.011G234000 Gossypium raimondii HOM05D003445 ORTHO05D004114 4.9e-08 62.8 36 80.6
Nn3g19092 Nelumbo nucifera HOM05D003445 ORTHO05D004114 4.9e-08 62.8 36 80.6
PGR142G3968 Punica granatum HOM05D003445 ORTHO05D004114 4.9e-08 62.8 36 80.6
SalBow4G0167 Salvia bowleyana HOM05D003445 ORTHO05D004114 4.9e-08 62.8 36 83.3
GSVIVG01016165001 Vitis vinifera HOM05D003445 ORTHO05D004114 4.9e-08 62.8 36 80.6
EL10As9g23938 Beta vulgaris HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
AUR62041269 Chenopodium quinoa HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
AUR62041795 Chenopodium quinoa HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
COL.COLO4_02905 Corchorus olitorius HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Duzib114G0852 Durio zibethinus HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Gohir.A05G291200 Gossypium hirsutum HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Gohir.A06G168900 Gossypium hirsutum HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Gohir.A10G200400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Gohir.D05G292300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Gohir.D06G176400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Gohir.D10G208300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Gorai.009G308500 Gossypium raimondii HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Gorai.010G207600 Gossypium raimondii HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
QL08p053096 Quercus lobata HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 83.3
Hund22304 Selenicereus undatus HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
Thecc.10G089500 Theobroma cacao HOM05D003445 ORTHO05D004114 6.4e-08 62.4 36 80.6
HPP92_020767 Vanilla planifolia HOM05D003445 ORTHO05D004114 6.4e-08 62.4 35 85.7
CANSAT56G2777 Cannabis sativa HOM05D003445 ORTHO05D004114 8.4e-08 62.0 35 82.9
Lalb_Chr02g0151111 Lupinus albus HOM05D003445 ORTHO05D004114 8.4e-08 62.0 36 77.8
Oeu060276.1 Olea europaea HOM05D003445 ORTHO05D004114 8.4e-08 62.0 36 83.3
Sed0007053 Sechium edule HOM05D003445 ORTHO05D004114 8.4e-08 62.0 36 80.6
ECA233G3917 Erigeron canadensis HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 80.6
Eucgr.G02737 Eucalyptus grandis HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 77.8
FvH4_7g06600 Fragaria vesca HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 80.6
FAN01G0566 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 80.6
FAN06G2771 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 80.6
FAN10G3468 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 80.6
Oeu015056.1 Olea europaea HOM05D003445 ORTHO05D010382 1.1e-07 61.6 36 83.3
Prupe.2G093900 Prunus persica HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 80.6
RcHm_v2.0_Chr1g0335271 Rosa chinensis HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 80.6
Sed0013139 Sechium edule HOM05D003445 ORTHO05D004114 1.1e-07 61.6 36 80.6
AT5G04430 Arabidopsis thaliana HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BcaB01g05898 Brassica carinata HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BcaB05g21762 Brassica carinata HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BcaC03g12945 Brassica carinata HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BcaC06g32151 Brassica carinata HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BcaNung04621 Brassica carinata HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
A03p01680 Brassica napus HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
A10p31650 Brassica napus HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
C02p01930 Brassica napus HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
C03p02050 Brassica napus HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
C09p72320 Brassica napus HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BolC2t06150H Brassica oleracea HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BolC3t12758H Brassica oleracea HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BolC9t59976H Brassica oleracea HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BraA02t04812Z Brassica rapa HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BraA03t09543Z Brassica rapa HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
BraA10t45211Z Brassica rapa HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
CARHR208830 Cardamine hirsuta HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
Cc02_g10580 Coffea canephora HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 80.6
Thhalv10014068m.g Eutrema salsugineum HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
Glyma.10G198300 Glycine max HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
Lalb_Chr19g0129371 Lupinus albus HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 75.0
Manes.11G087166 Manihot esculenta HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 80.6
Oeu060277.5 Olea europaea HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 83.3
Sp6g38310 Schrenkiella parvula HOM05D003445 ORTHO05D004114 1.4e-07 61.2 36 77.8
AL6G14070 Arabidopsis lyrata HOM05D003445 ORTHO05D004114 1.9e-07 60.8 36 77.8
MSTRG.8120 Avicennia marina HOM05D003445 ORTHO05D004114 1.9e-07 60.8 36 80.6
Carub.0006s0337 Capsella rubella HOM05D003445 ORTHO05D004114 1.9e-07 60.8 36 77.8
FAN03G1234 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.9e-07 60.8 36 80.6
Glyma.20G191700 Glycine max HOM05D003445 ORTHO05D004114 1.9e-07 60.8 36 77.8
TWI15G0156 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 1.9e-07 60.8 36 75.0
TWI38G0253 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 1.9e-07 60.8 36 75.0
TWI63G1099 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 1.9e-07 60.8 36 75.0
Lsat_1_v5_gn_8_17860 Lactuca sativa HOM05D003445 ORTHO05D004114 2.4e-07 60.5 36 80.6
Ciclev10032050m.g Citrus clementina HOM05D003445 ORTHO05D004114 3.2e-07 60.1 35 80.0
Duzib128G1656 Durio zibethinus HOM05D003445 ORTHO05D004114 3.2e-07 60.1 36 77.8
Lalb_Chr06g0170031 Lupinus albus HOM05D003445 ORTHO05D004114 3.2e-07 60.1 36 72.2
HPP92_014722 Vanilla planifolia HOM05D003445 ORTHO05D004114 3.2e-07 60.1 35 80.0
arahy.Tifrunner.gnm1.ann1.2WVS1U Arachis hypogaea HOM05D003445 ORTHO05D004114 4.2e-07 59.7 36 75.0
arahy.Tifrunner.gnm1.ann1.68AZQV Arachis hypogaea HOM05D003445 ORTHO05D004114 4.2e-07 59.7 36 75.0
Lalb_Chr01g0010281 Lupinus albus HOM05D003445 ORTHO05D004114 4.2e-07 59.7 35 77.1
MD02G1237900 Malus domestica HOM05D003445 ORTHO05D004114 4.2e-07 59.7 37 73.0
Nitab4.5_0009159g0020 Nicotiana tabacum HOM05D003445 ORTHO05D004114 4.2e-07 59.7 36 77.8
ATR0043G023 Amborella trichopoda HOM05D003445 ORTHO05D004114 5.4e-07 59.3 35 82.9
Aqoxy2G01633 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 5.4e-07 59.3 36 75.0
PSO339G4614 Papaver somniferum HOM05D003445 ORTHO05D004114 5.4e-07 59.3 36 77.8
PSO801G0704 Papaver somniferum HOM05D003445 ORTHO05D004114 5.4e-07 59.3 36 77.8
Phvul.007G141100 Phaseolus vulgaris HOM05D003445 ORTHO05D004114 5.4e-07 59.3 36 75.0
THA.LOC104816445 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 5.4e-07 59.3 36 75.0
VMungo0720G0843 Vigna mungo HOM05D003445 ORTHO05D004114 5.4e-07 59.3 36 75.0
Nitab4.5_0000096g0210 Nicotiana tabacum HOM05D003445 ORTHO05D004114 7.1e-07 58.9 36 75.0
Nitab4.5_0002692g0090 Nicotiana tabacum HOM05D003445 ORTHO05D004114 7.1e-07 58.9 36 75.0
Solyc05g055450.3 Solanum lycopersicum HOM05D003445 ORTHO05D004114 7.1e-07 58.9 36 77.8
Sopen05g033900 Solanum pennellii HOM05D003445 ORTHO05D004114 7.1e-07 58.9 36 77.8
PGSC0003DMG400023482 Solanum tuberosum HOM05D003445 ORTHO05D004114 7.1e-07 58.9 36 77.8
unitig_736.g22325 Utricularia gibba HOM05D003445 ORTHO05D004114 7.1e-07 58.9 36 75.0
Peaxi162Scf00253g00318 Petunia axillaris HOM05D003445 ORTHO05D004114 9.3e-07 58.5 36 75.0
Nitab4.5_0004047g0030 Nicotiana tabacum HOM05D003445 ORTHO05D004114 1.2e-06 58.2 36 75.0
Nitab4.5_0010505g0010 Nicotiana tabacum HOM05D003445 ORTHO05D004114 1.2e-06 58.2 36 75.0
Peaxi162Scf00409g00218 Petunia axillaris HOM05D003445 ORTHO05D004114 1.2e-06 58.2 36 75.0
Aa31LG11G5300 Aethionema arabicum HOM05D003445 ORTHO05D004114 1.6e-06 57.8 36 69.4
DCAR_019061 Daucus carota HOM05D003445 ORTHO05D004114 1.6e-06 57.8 36 75.0
Actinidia34789 Actinidia chinensis HOM05D003445 ORTHO05D004114 2.1e-06 57.4 35 82.9
Actinidia38891 Actinidia chinensis HOM05D003445 ORTHO05D004114 2.1e-06 57.4 35 82.9
CAN.G1891.4 Capsicum annuum HOM05D003445 ORTHO05D004114 2.1e-06 57.4 36 75.0
CiPaw.02G170100 Carya illinoinensis HOM05D003445 ORTHO05D004114 2.1e-06 57.4 36 72.2
HanXRQChr08g0218311 Helianthus annuus HOM05D003445 ORTHO05D004114 2.1e-06 57.4 36 75.0
Lj5g0011720 Lotus japonicus HOM05D003445 ORTHO05D004114 2.1e-06 57.4 36 69.4
PSO063G2817 Papaver somniferum HOM05D003445 ORTHO05D004114 2.1e-06 57.4 36 77.8
PSO339G2738 Papaver somniferum HOM05D003445 ORTHO05D004114 2.1e-06 57.4 36 77.8
Zm00001eb259230 Zea mays HOM05D003445 ORTHO05D004114 2.1e-06 57.4 35 80.0
MD02G1241800 Malus domestica HOM05D003445 ORTHO05D004114 2.7e-06 57.0 36 72.2
MD07G1074100 Malus domestica HOM05D003445 ORTHO05D004114 2.7e-06 57.0 36 72.2
THA.LOC104826969 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 2.7e-06 57.0 36 69.4
unitig_899.g15058 Utricularia gibba HOM05D003445 ORTHO05D004114 2.7e-06 57.0 36 72.2
CiPaw.01G265300 Carya illinoinensis HOM05D003445 ORTHO05D004114 3.5e-06 56.6 35 74.3
Lsat_1_v5_gn_2_103201 Lactuca sativa HOM05D003445 ORTHO05D004114 3.5e-06 56.6 36 75.0
Medtr1g090773 Medicago truncatula HOM05D003445 ORTHO05D004114 3.5e-06 56.6 36 69.4
Solyc09g150121.1 Solanum lycopersicum HOM05D003445 ORTHO05D004114 3.5e-06 56.6 36 72.2
Solyc11g007940.2 Solanum lycopersicum HOM05D003445 ORTHO05D004114 3.5e-06 56.6 36 72.2
Sopen11g003810 Solanum pennellii HOM05D003445 ORTHO05D004114 3.5e-06 56.6 36 72.2
PGSC0003DMG400027335 Solanum tuberosum HOM05D003445 ORTHO05D004114 3.5e-06 56.6 36 72.2
TPR.G37741 Trifolium pratense HOM05D003445 ORTHO05D004114 3.5e-06 56.6 36 69.4
CDE03G0484 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 4.6e-06 56.2 36 69.4
CDE08G1488 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 4.6e-06 56.2 35 77.1
Psat6g173360 Pisum sativum HOM05D003445 ORTHO05D004114 4.6e-06 56.2 36 69.4
Zm00001eb191030 Zea mays HOM05D003445 ORTHO05D004114 4.6e-06 56.2 35 77.1
Ca_10454_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 6.0e-06 55.8 36 69.4
BcaB05g22515 Brassica carinata HOM05D005757 ORTHO05D007090 7.9e-06 55.5 35 71.4
THA.LOC104823197 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 7.9e-06 55.5 36 66.7


User provided reference genes

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