Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 1.2e-255 885.9 442 100.0
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 4.4e-136 488.8 324 79.9
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 3.5e-133 479.2 332 76.8
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.6e-128 463.0 324 74.4
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.3e-127 460.7 315 75.6
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 8.3e-127 458.0 325 72.3
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 1.8e-126 456.8 313 75.4
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 2.4e-126 456.4 325 72.3
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 2.0e-125 453.4 325 71.7
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 4.5e-125 452.2 325 72.0
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 7.8e-125 451.4 326 71.5
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 7.8e-125 451.4 322 72.4
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 1.8e-121 440.3 325 70.2
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.2e-120 437.6 325 69.8
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 4.4e-120 435.6 325 69.2
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.3e-119 434.1 332 66.9
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 1.7e-119 433.7 323 68.7
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 2.2e-119 433.3 326 68.1
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.9e-119 432.2 326 68.7
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 1.9e-118 430.3 326 68.1
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 3.2e-118 429.5 324 69.1
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 5.4e-118 428.7 321 68.5
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 5.4e-118 428.7 331 67.1
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 5.4e-118 428.7 331 67.1
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.2e-117 427.6 323 67.8
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 7.8e-117 424.9 326 67.5
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.0e-116 424.5 323 67.2
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.7e-116 423.7 323 67.5
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 5.0e-116 422.2 325 67.4
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 6.6e-116 421.8 326 67.2
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 1.5e-115 420.6 323 68.4
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 1.5e-115 420.6 321 67.9
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.9e-115 420.2 326 67.2
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 3.3e-115 419.5 322 66.8
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 7.3e-115 418.3 325 68.0
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.6e-114 417.2 323 67.2
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 3.6e-114 416.0 332 66.0
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 8.0e-114 414.8 323 65.3
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 1.1e-113 414.5 324 67.3
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 5.2e-113 412.1 321 65.7
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 6.8e-113 411.8 325 67.4
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 3.4e-112 409.5 316 67.1
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 4.4e-112 409.1 325 66.5
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 4.4e-112 409.1 316 66.1
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 5.8e-112 408.7 365 60.0
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.3e-111 407.5 324 66.7
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 6.4e-111 405.2 325 65.5
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.4e-110 404.1 316 65.2
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.4e-110 404.1 316 65.2
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.9e-110 403.7 316 65.2
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 7.1e-110 401.7 321 64.2
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 2.7e-109 399.8 323 65.6
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 6.0e-109 398.7 330 64.5
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.0e-108 397.9 329 62.0
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.7e-108 397.1 341 61.9
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 1.7e-108 397.1 324 64.8
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.0e-108 396.4 331 62.5
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 4.3e-107 392.5 329 64.1
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 7.3e-107 391.7 324 65.4
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 7.3e-107 391.7 315 66.3
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 9.5e-107 391.3 318 65.1
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 6.2e-106 388.7 339 61.7
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 8.1e-106 388.3 327 63.6
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.4e-105 387.5 327 63.9
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 8.9e-105 384.8 321 62.9
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 1.2e-104 384.4 300 67.3
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 5.8e-104 382.1 322 62.7
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 7.6e-104 381.7 322 63.4
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 1.3e-103 380.9 306 64.4
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 2.2e-103 380.2 325 61.5
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 2.2e-103 380.2 314 65.3
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 2.9e-103 379.8 343 60.9
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 3.7e-103 379.4 296 65.9
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 8.3e-103 378.3 324 62.0
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 1.3e-100 370.9 322 62.4
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 1.5e-99 367.5 303 62.7
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 2.5e-99 366.7 331 58.0
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.3e-99 366.3 299 64.5
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 3.3e-99 366.3 299 64.2
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 3.3e-99 366.3 303 64.4
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 4.3e-99 365.9 315 61.9
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 9.6e-99 364.8 277 66.8
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.2e-98 364.4 299 63.9
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.6e-98 364.0 299 65.9
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 2.1e-98 363.6 299 63.9
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 2.1e-98 363.6 331 58.9
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 4.7e-98 362.5 300 64.0
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 2.4e-97 360.1 302 62.9
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.5e-96 357.5 301 64.5
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 4.4e-96 355.9 299 62.5
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 9.9e-96 354.8 325 57.8
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 5.4e-94 349.0 305 60.3
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 2.1e-93 347.1 333 57.4
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 7.8e-93 345.1 302 61.3
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 1.7e-92 344.0 333 56.8
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 8.7e-92 341.7 374 51.6
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 9.0e-89 331.6 325 57.8
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.2e-88 331.3 357 55.7
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 5.8e-88 328.9 309 55.3
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.2e-85 321.2 354 54.2
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 3.0e-84 316.6 325 55.7
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 9.9e-80 301.6 236 69.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 3.8e-79 299.7 256 62.5
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 6.0e-77 292.4 238 66.0
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.8e-68 264.2 332 46.1
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 2.1e-66 257.3 210 67.1
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 9.0e-65 251.9 242 59.9
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 2.6e-64 250.4 304 48.4
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.8e-60 237.7 242 55.0
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 7.7e-56 222.2 308 45.8
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 3.8e-55 219.9 139 74.8
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 5.0e-55 219.5 357 40.9
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 3.9e-44 183.3 191 56.0
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.5e-30 138.3 127 57.5
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 2.1e-29 134.4 161 47.2
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.0e-28 132.1 90 68.9
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 4.8e-26 123.2 304 32.6
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 3.5e-24 117.1 191 44.5
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 6.1e-21 106.3 113 54.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 6.1e-21 106.3 113 54.0
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 5.7e-19 99.8 82 67.1
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 9.8e-19 99.0 361 27.1
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-18 98.6 82 65.9
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-18 98.6 82 65.9
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 8.3e-18 95.9 79 67.1
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 2.4e-17 94.4 100 54.0
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 2.0e-16 91.3 90 56.7
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 2.9e-15 87.4 55 72.7
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.6e-13 81.6 51 68.6
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.2e-11 75.5 43 79.1
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 4.4e-11 73.6 102 38.2
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 5.9e-08 63.2 51 58.8
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 6.6e-07 59.7 50 66.0


User provided reference genes

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