Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.8e-221 772.3 399 100.0
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 2.1e-206 722.2 419 89.7
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.4e-205 719.5 423 88.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 9.9e-204 713.4 423 87.5
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 2.4e-202 708.8 423 87.2
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 5.4e-202 707.6 423 87.5
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.2e-201 706.4 423 87.2
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.6e-201 706.1 423 86.8
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 4.6e-201 704.5 419 87.6
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.4e-197 693.0 423 84.6
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.2e-196 689.9 423 84.6
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 7.6e-196 687.2 419 84.7
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 2.9e-195 685.3 415 84.6
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 6.4e-195 684.1 423 82.3
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.1e-194 683.3 422 83.9
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.4e-194 682.9 422 83.9
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 3.2e-194 681.8 422 84.6
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 3.2e-194 681.8 423 84.2
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 5.4e-194 681.0 421 82.9
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 7.1e-194 680.6 423 82.7
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 9.3e-194 680.2 420 82.9
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 9.3e-194 680.2 423 82.7
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 9.3e-194 680.2 420 82.9
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.2e-193 679.9 422 82.9
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.2e-193 679.9 422 82.9
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 2.1e-193 679.1 421 82.7
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 2.1e-193 679.1 423 83.9
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.5e-193 678.3 422 82.5
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 3.5e-193 678.3 419 83.3
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 3.5e-193 678.3 423 82.7
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 3.5e-193 678.3 421 82.7
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 3.5e-193 678.3 421 82.7
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 4.6e-193 677.9 422 82.7
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.3e-192 676.4 423 83.2
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.3e-192 676.4 422 82.7
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.3e-192 676.4 423 82.3
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.7e-192 676.0 422 83.9
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.7e-192 676.0 422 83.2
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.7e-192 676.0 422 82.5
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 1.7e-192 676.0 423 82.7
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.3e-192 675.6 422 82.2
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 3.0e-192 675.2 422 83.2
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.0e-192 675.2 422 82.5
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.1e-191 673.3 431 81.4
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 1.5e-191 672.9 422 82.0
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.5e-191 672.9 423 82.3
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.9e-191 672.5 423 82.3
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 1.9e-191 672.5 422 83.4
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 4.3e-191 671.4 423 82.0
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 4.3e-191 671.4 423 81.8
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 5.6e-191 671.0 423 82.5
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 5.6e-191 671.0 423 82.3
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 7.3e-191 670.6 420 82.1
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.6e-191 670.2 421 81.7
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.3e-190 669.8 423 81.6
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.6e-190 669.5 438 79.7
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.1e-190 669.1 423 82.5
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.1e-190 669.1 438 81.1
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.8e-190 668.7 419 82.6
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.8e-190 668.7 423 82.3
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 4.8e-190 667.9 422 81.8
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 4.8e-190 667.9 419 82.8
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 4.8e-190 667.9 423 81.3
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 1.1e-189 666.8 422 81.5
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.1e-189 666.8 419 82.8
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.4e-189 666.4 423 80.9
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.4e-189 666.4 420 81.9
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 1.4e-189 666.4 423 81.3
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.8e-189 666.0 420 81.9
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 2.4e-189 665.6 419 82.3
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 4.0e-189 664.8 471 74.9
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 4.0e-189 664.8 471 74.9
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 4.0e-189 664.8 420 81.7
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 4.0e-189 664.8 431 79.6
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 4.0e-189 664.8 419 82.1
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 6.9e-189 664.1 420 81.4
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 9.0e-189 663.7 423 80.9
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 9.0e-189 663.7 419 82.1
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.2e-188 663.3 419 80.9
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.2e-188 663.3 423 81.1
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.2e-188 663.3 421 81.2
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.5e-188 662.9 432 81.7
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 2.0e-188 662.5 422 81.0
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 2.6e-188 662.1 423 81.3
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 3.4e-188 661.8 423 80.9
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 3.4e-188 661.8 453 78.1
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.4e-188 661.8 418 81.6
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 3.4e-188 661.8 420 81.7
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 5.8e-188 661.0 422 81.0
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 5.8e-188 661.0 422 81.3
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 5.8e-188 661.0 422 81.3
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 7.6e-188 660.6 419 81.6
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 7.6e-188 660.6 422 80.6
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 9.9e-188 660.2 422 81.0
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 9.9e-188 660.2 422 81.0
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.7e-187 659.4 420 80.5
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.7e-187 659.4 422 80.6
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.7e-187 659.4 422 80.8
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.7e-187 659.4 423 81.8
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.2e-187 659.1 440 78.6
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 3.8e-187 658.3 422 80.6
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 3.8e-187 658.3 422 80.6
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 6.4e-187 657.5 422 80.6
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 8.4e-187 657.1 423 79.2
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 1.4e-186 656.4 422 80.3
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.4e-186 656.4 423 80.6
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 2.4e-186 655.6 420 80.5
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 7.1e-186 654.1 422 80.1
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 7.1e-186 654.1 419 80.4
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 1.2e-185 653.3 422 79.9
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 1.6e-185 652.9 419 81.4
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 4.6e-185 651.4 420 79.0
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 6.0e-185 651.0 424 79.7
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 7.9e-185 650.6 419 80.2
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.3e-184 649.8 425 79.3
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.1e-183 646.7 449 76.2
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.4e-181 639.8 419 80.4
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.4e-181 639.0 397 82.6
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.0e-179 633.6 429 76.2
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 7.9e-177 624.0 473 73.6
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 4.3e-175 618.2 502 67.3
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.1e-173 613.6 422 75.6
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 3.1e-173 612.1 388 81.4
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.4e-171 604.0 417 76.3
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.1e-170 603.6 389 79.7
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 3.2e-170 602.1 374 81.6
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 9.7e-167 590.5 378 79.1
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 1.6e-166 589.7 423 75.9
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 6.9e-165 584.3 434 69.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.0e-164 582.8 363 82.1
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 3.2e-162 575.5 373 78.6
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 5.5e-162 574.7 405 73.3
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 5.9e-156 554.7 397 69.8
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.7e-155 553.1 415 69.4
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.6e-148 529.3 318 86.8
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 7.7e-148 527.7 412 68.7
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.5e-146 523.5 334 79.3
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 3.6e-137 492.3 422 61.6
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 6.1e-137 491.5 277 91.0
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 5.7e-135 485.0 396 62.9
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 7.5e-135 484.6 396 63.9
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 9.1e-125 451.1 260 86.2
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.6e-121 440.3 461 56.8
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.3e-118 430.6 243 90.1
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-116 423.7 282 75.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 2.3e-115 419.9 392 63.3
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.1e-90 337.8 236 71.6
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.2e-86 323.6 225 72.9
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 7.1e-85 318.5 185 87.6
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.1e-80 303.1 244 63.9
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 1.7e-75 287.3 272 59.6
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 4.3e-74 282.7 293 51.9
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-59 234.6 191 60.7
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 4.2e-53 213.0 152 73.7
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 4.6e-52 209.5 207 57.0
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 5.1e-51 206.1 178 66.9
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.4e-45 188.0 114 89.5
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.8e-40 171.0 105 78.1
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 7.2e-37 159.1 303 35.0
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 7.9e-36 155.6 157 59.9
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 1.0e-35 155.2 157 59.2
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 1.4e-35 154.8 107 72.0
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.9e-29 134.4 119 59.7
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.5e-29 134.0 113 64.6
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 9.4e-29 132.1 82 79.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 8.5e-22 109.0 69 75.4
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 5.7e-18 96.3 179 33.0
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 1.2e-15 88.6 100 53.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 7.7e-15 85.9 53 86.8
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 2.2e-14 84.3 50 92.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 4.7e-12 76.6 40 97.5
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 5.2e-11 73.2 126 38.1
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 2.0e-10 71.2 295 29.8
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.7e-09 68.2 107 39.3
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 2.2e-09 67.8 107 39.3
Pp3c2_3730 Physcomitrium patens HOM05D002061 ORTHO05D002849 8.3e-09 65.9 403 25.3
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 5.4e-08 63.2 60 53.3
Cfa022239 Carpinus fangiana HOM05D002061 ORTHO05D121718 2.3e-06 57.8 319 22.3
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 2.3e-06 57.8 34 82.4


User provided reference genes

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