Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.1e-39 166.0 78 100.0
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.1e-39 166.0 78 100.0
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.9e-34 148.7 78 92.3
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 9.1e-21 103.2 67 73.1
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 1.2e-20 102.8 45 97.8
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 1.6e-20 102.4 69 69.6
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 2.7e-20 101.7 45 97.8
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.7e-20 101.7 45 95.6
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 3.5e-20 101.3 46 93.5
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.5e-20 101.3 46 93.5
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.5e-20 101.3 46 93.5
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.5e-20 101.3 46 93.5
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.5e-20 101.3 46 93.5
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 3.5e-20 101.3 48 89.6
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 3.5e-20 101.3 46 93.5
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.5e-20 101.3 46 93.5
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.5e-20 101.3 46 93.5
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 4.5e-20 100.9 45 95.6
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 4.5e-20 100.9 44 97.7
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.0e-19 99.8 46 91.3
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 1.0e-19 99.8 46 91.3
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 1.3e-19 99.4 46 91.3
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 1.7e-19 99.0 48 89.6
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 1.7e-19 99.0 46 89.1
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.7e-19 99.0 46 91.3
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 2.3e-19 98.6 44 95.5
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.9e-19 98.2 46 91.3
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.9e-19 98.2 46 91.3
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 2.9e-19 98.2 46 89.1
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 2.9e-19 98.2 46 89.1
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 2.9e-19 98.2 52 86.5
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.8e-19 97.8 45 93.3
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.8e-19 97.8 45 93.3
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 3.8e-19 97.8 46 91.3
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 91.3
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 91.3
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 89.1
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 91.3
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 91.3
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 91.3
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 91.3
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 91.3
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 5.0e-19 97.4 46 91.3
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 6.6e-19 97.1 50 86.0
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 6.6e-19 97.1 46 89.1
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.1e-18 96.3 44 90.9
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.1e-18 96.3 46 89.1
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.1e-18 96.3 46 89.1
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 1.1e-18 96.3 46 89.1
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 1.5e-18 95.9 44 93.2
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.5e-18 95.9 46 91.3
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 1.9e-18 95.5 44 93.2
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.9e-18 95.5 44 93.2
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.9e-18 95.5 46 89.1
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.5e-18 95.1 46 87.0
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 2.5e-18 95.1 44 90.9
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 2.5e-18 95.1 46 89.1
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 2.5e-18 95.1 46 89.1
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 2.5e-18 95.1 46 93.5
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 2.5e-18 95.1 54 77.8
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 3.3e-18 94.7 47 87.2
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 3.3e-18 94.7 47 87.2
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 3.3e-18 94.7 47 87.2
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 3.3e-18 94.7 47 87.2
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 3.3e-18 94.7 46 87.0
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 4.2e-18 94.4 47 87.2
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 4.2e-18 94.4 46 87.0
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 5.5e-18 94.0 46 87.0
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 5.5e-18 94.0 44 90.9
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 7.2e-18 93.6 44 88.6
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 7.2e-18 93.6 47 89.4
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 7.2e-18 93.6 47 87.2
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 7.2e-18 93.6 47 89.4
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 9.5e-18 93.2 46 87.0
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 9.5e-18 93.2 45 86.7
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 9.5e-18 93.2 45 88.9
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 9.5e-18 93.2 54 77.8
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 9.5e-18 93.2 45 93.3
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.2e-17 92.8 44 90.9
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 1.2e-17 92.8 44 88.6
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.2e-17 92.8 46 84.8
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.2e-17 92.8 46 84.8
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.2e-17 92.8 40 97.5
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.1e-17 92.0 46 87.0
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 2.1e-17 92.0 44 90.9
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 2.8e-17 91.7 46 82.6
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 3.6e-17 91.3 44 88.6
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 3.6e-17 91.3 46 80.4
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 3.6e-17 91.3 46 82.6
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.6e-17 91.3 46 87.0
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 4.7e-17 90.9 46 82.6
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 4.7e-17 90.9 46 84.8
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 6.1e-17 90.5 47 85.1
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 6.1e-17 90.5 47 85.1
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 8.0e-17 90.1 44 84.1
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 8.0e-17 90.1 46 84.8
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 8.0e-17 90.1 46 84.8
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 1.4e-16 89.4 58 67.2
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 2.3e-16 88.6 46 82.6
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 4.0e-16 87.8 42 85.7
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 6.8e-16 87.0 43 86.0
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 6.8e-16 87.0 41 87.8
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.2e-15 86.3 46 78.3
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 2.0e-15 85.5 47 80.9
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 2.0e-15 85.5 47 80.9
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 2.6e-15 85.1 48 81.2
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.4e-15 84.7 46 84.8
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.4e-15 84.7 46 84.8
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 4.4e-15 84.3 44 79.5
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 9.8e-15 83.2 42 83.3
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.7e-14 82.4 46 71.7
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.7e-14 82.4 42 85.7
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.2e-14 82.0 46 71.7
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.2e-14 82.0 46 71.7
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 2.2e-14 82.0 48 79.2
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 4.9e-14 80.9 68 60.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.1e-13 79.7 42 78.6
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 5.4e-13 77.4 44 77.3
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 5.4e-13 77.4 44 77.3
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 7.0e-13 77.0 48 68.8
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 7.8e-12 73.6 35 88.6
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 7.8e-12 73.6 36 86.1
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 1.7e-11 72.4 48 64.6
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 2.3e-11 72.0 39 74.4
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 2.9e-11 71.6 37 78.4
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 6.6e-11 70.5 47 66.0
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 8.6e-11 70.1 41 75.6
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 2.5e-10 68.6 44 68.2
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 5.6e-10 67.4 32 84.4
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 5.6e-10 67.4 48 60.4
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 9.5e-10 66.6 78 46.2
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 9.5e-10 66.6 48 70.8
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 1.2e-09 66.2 47 72.3
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.6e-09 65.9 33 81.8
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 5.2e-08 60.8 52 53.8
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 1.5e-07 59.3 37 67.6
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.0e-07 58.9 50 50.0
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 5.8e-07 57.4 51 47.1
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 5.8e-07 57.4 51 47.1
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 7.5e-07 57.0 77 42.9
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 9.8e-07 56.6 51 47.1
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.7e-06 55.8 43 51.2
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 3.7e-06 54.7 24 95.8


User provided reference genes

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