Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.4e-61 240.7 291 100.0
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.0e-57 226.9 291 97.6
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.5e-55 220.7 326 88.3
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 3.3e-31 139.8 324 73.1
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 8.1e-30 135.2 284 77.8
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 6.9e-29 132.1 324 71.3
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 1.2e-28 131.3 325 74.5
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 3.4e-28 129.8 277 82.7
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 6.4e-27 125.6 285 77.5
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 4.2e-26 122.9 273 81.0
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 7.1e-26 122.1 278 79.5
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 7.1e-26 122.1 284 77.1
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 1.3e-24 117.9 278 61.9
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 1.3e-24 117.9 317 59.6
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 3.0e-24 116.7 277 75.5
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 5.1e-24 115.9 278 79.5
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 1.9e-23 114.0 318 67.6
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 2.5e-23 113.6 278 80.6
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 3.3e-23 113.2 290 70.0
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 4.3e-23 112.8 276 79.0
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 4.3e-23 112.8 319 69.9
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 7.3e-23 112.1 276 79.3
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 2.1e-22 110.5 316 69.6
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 4.8e-22 109.4 280 71.1
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 6.2e-22 109.0 287 76.7
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 8.1e-22 108.6 319 69.3
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 8.1e-22 108.6 278 75.2
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 1.4e-21 107.8 278 75.5
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.4e-21 107.8 320 69.7
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 1.4e-21 107.8 277 79.4
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 1.8e-21 107.5 325 70.2
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 2.4e-21 107.1 278 78.1
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 2.4e-21 107.1 279 77.4
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.4e-21 107.1 320 69.7
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 5.3e-21 105.9 321 68.5
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 5.3e-21 105.9 278 75.9
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 5.3e-21 105.9 278 77.3
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 9.0e-21 105.1 278 78.1
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 9.0e-21 105.1 278 78.1
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 9.0e-21 105.1 287 74.6
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 1.2e-20 104.8 280 73.2
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 1.2e-20 104.8 276 78.3
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 1.2e-20 104.8 278 80.2
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 1.5e-20 104.4 325 66.8
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 1.5e-20 104.4 278 77.7
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.5e-20 104.4 240 67.5
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 2.0e-20 104.0 319 69.0
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 2.0e-20 104.0 278 76.3
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 3.4e-20 103.2 278 75.9
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 4.5e-20 102.8 273 70.3
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 5.8e-20 102.4 318 67.6
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 9.9e-20 101.7 278 74.8
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 1.3e-19 101.3 279 81.0
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 1.7e-19 100.9 325 66.2
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 1.7e-19 100.9 278 74.1
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 4.9e-19 99.4 273 79.9
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 6.4e-19 99.0 277 76.5
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 6.4e-19 99.0 325 39.7
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 6.4e-19 99.0 324 67.9
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 1.4e-18 97.8 325 69.5
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.4e-18 97.8 325 66.8
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.4e-18 97.8 325 66.8
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 1.4e-18 97.8 320 67.2
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.9e-18 97.4 318 68.2
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.9e-18 97.4 318 68.2
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 2.4e-18 97.1 277 76.5
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 2.4e-18 97.1 278 75.9
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 3.2e-18 96.7 278 72.7
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 4.2e-18 96.3 278 78.4
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 5.4e-18 95.9 323 64.7
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 9.3e-18 95.1 318 68.9
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 9.3e-18 95.1 318 68.9
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 9.3e-18 95.1 319 67.7
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 9.3e-18 95.1 319 67.4
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 7.9e-17 92.0 57 68.4
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.3e-16 91.3 57 66.7
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 1.3e-16 91.3 278 73.7
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 1.8e-16 90.9 278 75.2
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 2.3e-16 90.5 56 71.4
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 3.9e-16 89.7 58 65.5
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 3.9e-16 89.7 324 58.0
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 8.7e-16 88.6 366 54.9
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 1.5e-15 87.8 55 69.1
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 1.5e-15 87.8 273 68.1
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 1.5e-15 87.8 278 75.2
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 2.5e-15 87.0 277 74.7
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 2.5e-15 87.0 318 68.2
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 2.5e-15 87.0 318 68.2
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 7.4e-15 85.5 57 66.7
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 9.6e-15 85.1 58 65.5
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 1.6e-14 84.3 273 72.5
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 2.1e-14 84.0 56 62.5
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 2.8e-14 83.6 277 74.7
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 3.7e-14 83.2 57 66.7
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 8.1e-14 82.0 57 63.2
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 8.1e-14 82.0 57 63.2
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 1.1e-13 81.6 57 59.6
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 1.1e-13 81.6 292 61.0
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 1.4e-13 81.3 57 66.7
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 1.4e-13 81.3 57 63.2
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 1.4e-13 81.3 57 63.2
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 1.8e-13 80.9 57 63.2
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 2.4e-13 80.5 57 63.2
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 6.9e-13 79.0 56 60.7
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.7e-11 74.3 53 66.0
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 1.6e-09 67.8 47 66.0
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 7.9e-09 65.5 64 53.1
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 5.7e-07 59.3 47 61.7
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 9.6e-07 58.5 38 65.8
Hma1.2p1_2405F.1_g321440 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 1.3e-06 58.2 51 43.1
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.3e-06 58.2 44 56.8
Hma1.2p1_0244F.1_g101100 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 1.6e-06 57.8 51 43.1
ECA247G3292 Erigeron canadensis HOM05D002901 ORTHO05D003183 2.1e-06 57.4 50 42.0
CANSAT25G2219 Cannabis sativa HOM05D002901 ORTHO05D003183 2.8e-06 57.0 50 44.0
SGA_v2.0_scaffold7G03687 Striga asiatica HOM05D002901 ORTHO05D003183 2.8e-06 57.0 50 44.0
Lsat_1_v5_gn_9_1861 Lactuca sativa HOM05D002901 ORTHO05D003183 3.7e-06 56.6 53 39.6
vmacro19244 Vaccinium macrocarpon HOM05D002901 ORTHO05D003183 3.7e-06 56.6 50 44.0
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 6.2e-06 55.8 45 57.8
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 6.2e-06 55.8 248 77.0
LjContig00155g0015255 Lotus japonicus HOM05D002901 ORTHO05D003183 6.2e-06 55.8 50 42.0
HanXRQChr15g0466591 Helianthus annuus HOM05D002901 ORTHO05D003183 8.2e-06 55.5 50 40.0
Lsat_1_v5_gn_2_2920 Lactuca sativa HOM05D002901 ORTHO05D003183 8.2e-06 55.5 53 39.6


User provided reference genes

Program Settings