Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 2.5e-193 678.7 376 100.0
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 5.4e-111 405.2 318 67.6
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.6e-110 403.7 321 66.4
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 5.1e-109 398.7 318 65.4
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 1.7e-101 373.6 349 57.9
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 8.7e-101 371.3 308 61.7
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 2.5e-100 369.8 308 62.0
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 9.6e-100 367.9 322 61.2
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 9.6e-100 367.9 311 61.4
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 1.3e-99 367.5 324 60.2
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 3.6e-99 365.9 324 60.5
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 6.2e-99 365.2 333 59.2
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 6.2e-99 365.2 308 61.0
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 1.8e-98 363.6 303 64.4
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 3.1e-98 362.8 326 59.2
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.2e-94 350.9 328 56.1
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 5.1e-93 345.5 313 57.5
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 1.9e-92 343.6 291 60.1
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.9e-92 343.6 306 58.2
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.3e-91 340.9 329 55.0
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 2.8e-91 339.7 332 55.1
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 8.1e-91 338.2 337 54.3
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.4e-90 337.4 323 57.0
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 4.0e-90 335.9 343 53.4
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 9.0e-90 334.7 312 56.1
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 3.4e-89 332.8 327 56.3
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 4.5e-89 332.4 330 54.8
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 5.8e-89 332.0 297 63.6
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 1.3e-88 330.9 290 59.7
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 4.9e-88 328.9 326 57.4
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 8.4e-88 328.2 291 60.8
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.1e-87 327.8 294 58.5
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 3.2e-87 326.2 288 58.0
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 4.2e-87 325.9 303 57.4
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 9.3e-87 324.7 292 58.6
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 9.3e-87 324.7 292 57.2
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 1.6e-86 323.9 289 58.8
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 4.6e-86 322.4 299 58.5
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 6.0e-86 322.0 308 55.5
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 1.0e-85 321.2 315 54.9
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 1.0e-85 321.2 329 52.0
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 1.0e-85 321.2 297 55.9
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 1.8e-85 320.5 301 57.1
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 2.3e-85 320.1 320 54.1
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 3.0e-85 319.7 288 58.3
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 3.9e-85 319.3 289 58.1
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 3.9e-85 319.3 323 55.1
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 5.1e-85 318.9 324 54.6
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 8.7e-85 318.2 302 55.6
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 8.7e-85 318.2 295 56.3
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 3.3e-84 316.2 308 54.2
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 3.3e-84 316.2 289 57.8
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 7.4e-84 315.1 307 56.4
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 8.2e-83 311.6 328 53.4
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 4.1e-82 309.3 364 51.9
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 4.1e-82 309.3 328 49.1
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 1.2e-81 307.8 321 52.3
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 2.0e-81 307.0 295 53.9
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 5.9e-81 305.4 298 55.7
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 3.8e-80 302.8 324 50.9
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 3.8e-80 302.8 321 51.4
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 1.1e-79 301.2 292 53.1
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 3.2e-79 299.7 340 49.4
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 7.2e-79 298.5 295 52.2
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.6e-78 297.4 333 48.0
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 2.7e-78 296.6 300 52.3
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.5e-78 296.2 330 50.0
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 7.9e-78 295.0 333 47.7
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.0e-77 294.7 333 47.7
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 1.8e-77 293.9 308 57.5
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.0e-77 293.1 332 47.6
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 3.0e-77 293.1 293 52.6
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 3.9e-77 292.7 331 49.8
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 7.4e-76 288.5 310 51.3
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 7.4e-76 288.5 331 52.3
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 8.2e-75 285.0 290 52.1
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.8e-74 283.9 307 48.2
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.8e-74 283.9 310 51.3
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 9.0e-74 281.6 288 50.3
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 2.2e-72 276.9 345 46.1
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 2.2e-72 276.9 320 46.6
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 1.1e-71 274.6 279 49.8
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 1.8e-69 267.3 284 50.0
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 1.5e-68 264.2 309 47.9
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 4.1e-66 256.1 297 47.8
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 7.7e-65 251.9 335 44.2
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 6.7e-61 238.8 311 45.0
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 1.7e-56 224.2 248 47.2
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 5.5e-55 219.2 310 41.9
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 4.4e-52 209.5 326 43.3
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 5.3e-50 202.6 291 44.3
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 9.4e-47 191.8 219 48.4
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 6.8e-45 185.7 280 40.7
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 9.8e-44 181.8 204 47.1
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.6e-33 147.9 121 62.8
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 1.8e-29 134.4 86 67.4
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 3.2e-26 123.6 293 28.0
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 6.6e-24 115.9 128 46.9
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 5.6e-23 112.8 145 48.3
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 5.6e-23 112.8 104 53.8
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 8.9e-21 105.5 174 35.1
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 5.4e-18 96.3 114 45.6
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-17 95.1 298 23.5
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 8.9e-13 79.0 131 41.2
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 5.8e-12 76.3 65 49.2
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.0e-08 65.5 52 63.5


User provided reference genes

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