Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 0.0e+00 1661.4 816 100.0
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 0.0e+00 1228.0 783 79.2
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 0.0e+00 1194.5 802 74.7
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 0.0e+00 1130.9 791 72.3
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1099.7 777 71.2
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1090.1 777 70.0
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 0.0e+00 1084.3 783 70.8
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 5.6e-312 1073.5 776 69.3
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 5.2e-308 1060.8 777 68.0
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 5.2e-308 1060.8 771 67.3
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 4.4e-307 1057.7 770 67.8
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 2.0e-304 1048.9 797 66.6
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.3e-303 1046.2 777 67.6
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 9.4e-302 1040.0 780 67.4
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.1e-301 1038.9 776 67.4
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.4e-300 1036.2 785 65.4
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.8e-300 1035.8 771 66.3
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.8e-300 1035.8 777 65.1
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 3.4e-299 1031.6 792 65.5
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 2.8e-298 1028.5 777 65.8
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 3.7e-298 1028.1 777 65.8
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.4e-297 1026.2 788 66.8
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.0e-296 1022.3 772 66.2
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.5e-296 1021.5 738 69.2
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 2.2e-295 1018.8 786 66.0
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 4.2e-294 1014.6 794 65.0
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.7e-293 1011.9 791 65.2
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 6.1e-293 1010.7 777 65.8
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.0e-293 1010.4 786 65.6
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 8.0e-293 1010.4 782 64.3
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.0e-292 1010.0 790 65.3
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.3e-292 1008.8 787 65.7
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 6.8e-292 1007.3 792 63.5
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 8.8e-292 1006.9 784 63.5
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.2e-291 1006.5 796 64.7
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.5e-291 1006.1 783 65.4
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 2.8e-290 1001.9 793 63.8
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 4.9e-290 1001.1 776 65.3
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.4e-289 999.6 749 66.6
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.4e-289 998.8 825 63.0
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 4.3e-286 988.0 763 65.3
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 7.3e-286 987.3 762 66.3
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 7.3e-286 987.3 786 63.4
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 9.5e-286 986.9 771 63.2
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.6e-285 986.1 787 64.0
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 6.1e-285 984.2 787 64.2
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 8.0e-285 983.8 786 63.6
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 5.7e-283 977.6 774 63.3
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.4e-281 973.0 789 63.0
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.4e-281 971.1 789 62.7
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 9.2e-281 970.3 839 61.0
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 3.5e-280 968.4 784 62.6
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.7e-279 966.1 790 61.4
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 2.5e-278 962.2 789 62.4
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 3.3e-278 961.8 767 63.4
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 3.3e-278 961.8 778 62.1
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 8.0e-277 957.2 801 60.3
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 1.2e-275 953.4 795 61.6
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 7.5e-275 950.7 771 62.4
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 4.6e-272 941.4 801 60.0
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.7e-271 939.5 796 59.7
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 3.0e-271 938.7 779 60.8
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 8.6e-271 937.2 795 59.5
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 8.6e-271 937.2 779 60.2
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 5.6e-270 934.5 783 61.8
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 7.3e-270 934.1 776 60.6
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 3.6e-269 931.8 780 60.9
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 3.1e-268 928.7 796 58.3
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 8.9e-268 927.2 778 60.7
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 2.6e-267 925.6 789 59.7
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 3.4e-267 925.2 793 59.9
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 5.8e-267 924.5 778 59.6
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 7.5e-267 924.1 787 60.2
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.2e-266 922.5 766 60.4
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 2.9e-266 922.2 795 59.4
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.7e-266 921.8 781 59.5
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 4.9e-266 921.4 778 60.0
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 2.4e-265 919.1 723 64.6
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 3.2e-265 918.7 787 59.0
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 5.4e-265 917.9 793 58.6
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 9.2e-265 917.1 796 58.8
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 9.2e-265 917.1 779 59.9
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 9.2e-265 917.1 796 58.8
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-264 916.0 778 59.9
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 2.7e-264 915.6 778 59.9
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 3.5e-264 915.2 784 60.7
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 3.5e-264 915.2 779 59.7
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.5e-264 915.2 795 58.4
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.5e-264 915.2 786 59.5
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 4.6e-264 914.8 786 59.7
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 7.8e-264 914.1 803 59.4
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.0e-263 913.7 793 59.4
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.0e-263 912.1 786 59.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.6e-263 910.6 788 58.8
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.9e-262 909.4 786 59.3
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 2.5e-262 909.1 806 58.3
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.3e-262 908.7 777 59.8
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 5.6e-262 907.9 778 59.5
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.6e-261 906.4 795 58.4
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 3.6e-261 905.2 784 59.1
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.4e-260 903.3 792 60.1
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.3e-260 902.5 783 58.5
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 5.2e-260 901.4 780 59.1
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.6e-259 899.0 773 59.6
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.9e-257 892.9 789 58.9
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.2e-257 892.1 766 57.7
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 5.4e-257 891.3 781 60.4
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.0e-256 887.9 803 58.4
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.0e-255 887.1 786 58.3
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.0e-255 885.6 786 58.7
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 5.1e-255 884.8 787 58.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 5.1e-255 884.8 786 57.8
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.5e-254 882.5 831 56.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 4.3e-254 881.7 790 57.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.8e-253 879.0 787 58.1
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 8.1e-253 877.5 795 57.2
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.1e-252 877.1 779 58.4
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.4e-252 876.7 803 57.7
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 2.6e-251 872.5 774 58.4
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 7.6e-251 870.9 775 58.6
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.3e-250 870.2 780 57.3
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 8.4e-250 867.5 776 57.7
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 8.4e-250 867.5 775 58.3
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 7.8e-248 860.9 775 59.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 9.6e-246 854.0 777 57.1
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.3e-245 853.6 777 57.3
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 8.1e-245 850.9 782 56.6
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.3e-242 843.6 786 57.1
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 5.1e-239 831.6 781 56.7
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.9e-238 829.7 790 55.7
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 4.3e-238 828.6 766 54.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.3e-237 827.0 675 62.1
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 5.3e-236 821.6 784 56.2
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 2.6e-235 819.3 767 55.9
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 7.6e-235 817.8 783 55.7
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.9e-234 815.8 788 54.8
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.5e-232 808.9 576 68.9
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 6.9e-228 794.7 769 54.1
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 3.4e-219 765.8 735 55.1
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.9e-214 750.0 766 51.8
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.8e-212 743.4 760 53.3
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 8.5e-210 734.6 784 52.0
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.2e-187 661.0 615 57.9
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.2e-174 617.8 750 47.1
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.5e-161 573.5 875 40.0
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.5e-155 553.1 860 39.4
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 5.2e-151 539.3 357 73.7
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.4e-148 531.2 863 38.5
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 5.4e-148 529.3 816 38.1
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.2e-139 501.5 426 60.8
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.3e-133 481.5 844 36.5
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 2.1e-131 474.2 339 68.7
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 4.5e-126 456.4 476 52.3
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 7.4e-121 439.1 662 40.2
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 7.4e-105 386.0 318 63.8
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.6e-99 368.2 417 48.4
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 1.4e-87 328.6 264 64.4
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 4.8e-80 303.5 339 47.8
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.7e-72 277.3 607 33.1
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.4e-71 275.4 184 71.7
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 5.2e-66 256.9 861 27.2
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 6.8e-66 256.5 267 55.4
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 1.4e-58 232.3 173 65.3
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 9.2e-55 219.5 177 64.4
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.3e-53 214.9 151 69.5
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 4.1e-47 194.1 202 55.0
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 9.5e-44 183.0 103 86.4
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.6e-43 182.2 200 52.5
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 3.1e-42 177.9 226 45.1
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.4e-39 169.1 135 63.0
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.1e-38 165.2 99 77.8
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.6e-36 157.1 102 73.5
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.6e-35 155.6 574 26.8
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 5.2e-34 150.6 457 26.9
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.6e-30 137.5 101 64.4
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 5.6e-28 130.6 117 60.7
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 6.4e-16 90.5 95 53.7
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 2.8e-11 75.1 109 40.4
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 1.4e-07 62.8 47 66.0
CAN.G744.3 Capsicum annuum HOM05D002670 ORTHO05D003079 5.4e-07 60.8 86 45.3


User provided reference genes

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