Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 2.3e-99 365.5 183 100.0
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.9e-94 348.6 183 94.0
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 8.5e-94 347.1 183 93.4
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 6.1e-92 340.9 183 91.8
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.3e-91 339.0 183 90.7
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.3e-91 339.0 183 90.2
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.3e-91 339.0 183 90.2
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 6.8e-91 337.4 181 90.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 6.8e-91 337.4 183 91.3
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 8.8e-91 337.0 183 90.7
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 90.2
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 4.4e-90 334.7 183 89.6
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 9.8e-90 333.6 183 90.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 89.1
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 6.3e-89 330.9 181 89.5
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.4e-88 329.7 182 87.9
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 86.9
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 88.0
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 87.4
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 88.5
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 88.5
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 88.5
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 87.4
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 85.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 85.2
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 86.9
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 85.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 87.4
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 88.0
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 85.8
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 87.4
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 86.9
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 87.4
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 86.3
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 85.8
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 85.8
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 85.2
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 86.3
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 86.9
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 85.2
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 85.8
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 85.2
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 86.3
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 85.8
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 83.6
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 83.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.2
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.2
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 84.2
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 5.5e-85 317.8 182 83.0
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 84.2
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 83.6
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.2e-84 316.6 182 84.6
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 82.0
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 2.1e-84 315.8 182 81.9
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 82.5
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 82.0
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 82.0
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 83.6
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.4e-83 313.2 182 81.3
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 84.2
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 81.4
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 2.3e-83 312.4 181 84.0
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.5
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 4.0e-83 311.6 179 84.4
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 80.9
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 82.3
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 79.8
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.5e-82 309.7 190 80.5
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 80.9
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 80.9
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 80.9
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 80.9
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 82.0
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 80.9
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 82.9
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 82.9
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 82.9
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 80.9
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 80.3
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 80.7
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 82.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 82.9
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 80.9
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.7e-81 306.2 181 81.2
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 80.3
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 80.7
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 80.9
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.7
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 80.7
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 9.2e-80 300.4 179 82.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 9.2e-80 300.4 179 82.7
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 80.1
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.2e-79 300.1 179 82.7
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.6e-79 299.7 179 81.6
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.6e-79 299.7 183 79.8
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.0e-79 299.3 179 82.1
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 79.8
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 4.5e-79 298.1 228 68.4
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.7e-78 296.2 179 80.4
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 2.9e-78 295.4 182 80.8
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 6.6e-78 294.3 184 77.2
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 78.1
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.1e-77 293.5 184 77.2
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 3.3e-77 292.0 183 77.6
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 5.6e-77 291.2 183 76.0
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 5.6e-77 291.2 183 74.9
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 76.1
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.8e-75 286.2 184 76.1
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 6.8e-75 284.3 183 76.0
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 1.5e-74 283.1 184 74.5
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.0e-74 282.7 183 73.8
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 3.7e-73 278.5 184 72.3
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 4.9e-73 278.1 219 66.2
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 4.9e-73 278.1 152 88.8
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 8.3e-73 277.3 183 70.5
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 3.2e-72 275.4 183 77.0
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 3.2e-72 275.4 182 73.1
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 2.0e-71 272.7 155 82.6
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 4.6e-71 271.6 185 73.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-68 263.5 155 82.6
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 6.2e-68 261.2 183 72.7
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 4.0e-67 258.5 181 66.9
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 5.2e-67 258.1 181 74.0
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.5e-66 256.5 152 80.3
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 3.3e-61 238.8 181 67.4
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 7.3e-61 237.7 136 83.1
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 9.5e-61 237.3 188 67.0
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 9.9e-58 227.3 183 65.0
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 2.2e-57 226.1 138 76.8
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.4e-56 222.6 179 68.2
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.3e-54 216.1 175 64.0
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.1e-54 214.9 183 63.4
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 8.6e-54 214.2 155 71.0
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.8e-52 209.1 152 67.1
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.8e-51 206.5 158 65.2
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 9.2e-48 194.1 102 92.2
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.7e-46 189.9 149 62.4
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.7e-46 189.9 105 86.7
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 3.3e-45 185.7 100 88.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.1e-44 183.0 100 89.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.6e-44 182.2 99 87.9
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 6.2e-44 181.4 158 60.1
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.5e-42 176.8 186 46.2
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 5.8e-42 174.9 132 63.6
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 1.4e-40 170.2 106 76.4
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 7.8e-39 164.5 134 64.2
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.4e-35 153.7 105 71.4
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.9e-32 143.3 99 67.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 7.1e-32 141.4 81 84.0
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 2.7e-31 139.4 78 87.2
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.4e-29 131.3 81 76.5
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.1e-27 127.5 101 64.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 4.5e-26 122.1 106 59.4
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.5e-21 107.1 106 57.5
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 7.4e-21 104.8 68 69.1
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.6e-18 94.7 52 88.5
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 6.0e-15 85.1 127 44.9
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 9.4e-08 61.2 81 45.7
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-07 60.8 121 37.2
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 8.8e-06 54.7 37 67.6


User provided reference genes

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