Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 4.7e-253 877.5 478 100.0
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.2e-197 690.6 460 79.8
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 9.4e-193 677.2 460 78.7
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.0e-182 642.9 460 76.3
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-160 570.1 463 68.7
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 9.2e-156 554.3 457 66.5
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.6e-147 525.4 349 79.9
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 9.9e-134 481.1 462 58.7
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 3.6e-128 462.6 459 58.0
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 4.6e-123 445.7 459 56.9
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 6.6e-122 441.8 461 54.9
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.5e-118 430.6 468 54.3
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.4e-116 424.1 460 54.6
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.2e-115 421.0 485 52.0
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 9.6e-113 411.4 469 53.9
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.6e-112 410.6 466 55.4
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 6.2e-112 408.7 459 54.0
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.4e-111 406.8 471 52.7
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 4.0e-111 406.0 470 53.6
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.0e-110 403.7 469 53.3
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.5e-110 402.5 460 51.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 2.2e-109 400.2 461 50.8
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.2e-108 396.4 460 52.0
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 3.2e-108 396.4 462 51.9
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 2.7e-107 393.3 460 51.5
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.9e-107 391.7 460 51.5
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 5.1e-106 389.0 465 49.7
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 4.8e-104 382.5 460 51.5
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.5e-102 377.5 468 50.9
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.0e-101 374.8 464 48.5
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 3.8e-101 372.9 481 46.2
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.1e-100 371.3 461 48.4
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 9.3e-100 368.2 465 47.5
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 3.6e-99 366.3 458 48.5
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.3e-98 364.4 455 48.8
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 2.3e-98 363.6 460 46.5
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 3.0e-98 363.2 461 48.4
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.9e-97 360.5 481 45.9
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.5e-97 360.1 460 48.7
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.3e-97 359.4 502 45.6
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 4.3e-97 359.4 455 48.1
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.6e-96 357.5 468 49.6
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.4e-95 354.4 460 48.9
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 3.1e-95 353.2 502 45.8
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.1e-91 340.5 467 46.9
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 7.9e-91 338.6 458 46.1
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.5e-89 334.3 459 47.1
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.5e-89 334.3 368 52.7
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.5e-89 334.3 486 43.2
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 6.3e-88 328.9 482 44.2
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.8e-87 327.4 465 43.9
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 4.1e-87 326.2 468 44.4
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 5.3e-87 325.9 368 52.4
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 9.1e-87 325.1 465 43.9
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 2.0e-86 323.9 463 43.4
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.0e-82 311.6 481 42.2
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 6.7e-82 308.9 473 43.1
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.3e-81 306.6 511 42.5
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 4.4e-81 306.2 481 42.6
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.7e-80 304.3 469 42.6
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.8e-80 303.5 460 43.9
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 3.7e-80 303.1 481 42.2
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 4.8e-80 302.8 501 43.3
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.4e-79 301.2 478 45.2
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.2e-78 298.1 429 44.1
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.5e-78 296.2 509 41.1
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 3.8e-77 293.1 437 43.9
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.2e-76 290.0 477 44.2
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 7.5e-73 278.9 455 45.5
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.4e-71 274.6 489 40.9
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.6e-70 271.2 416 43.5
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.2e-69 267.3 520 40.2
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.0e-66 258.5 467 40.0
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 3.0e-66 256.9 479 40.3
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.2e-64 250.8 464 39.9
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 3.7e-64 250.0 481 40.1
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 4.8e-64 249.6 476 39.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 9.1e-63 245.4 481 39.1
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-62 245.0 422 41.7
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 3.2e-60 236.9 498 40.4
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 3.2e-60 236.9 468 38.5
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 6.1e-59 232.6 566 35.5
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 4.0e-58 229.9 470 36.0
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.4e-57 226.9 440 38.0
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 7.5e-57 225.7 568 34.0
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 7.5e-57 225.7 481 36.2
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 7.5e-57 225.7 468 38.5
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 4.9e-56 223.0 559 35.8
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.1e-55 221.9 465 35.9
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 9.2e-55 218.8 561 34.4
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.2e-51 208.4 472 38.1
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.8e-51 207.2 470 35.3
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 4.4e-49 199.9 465 37.0
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 3.2e-47 193.7 562 33.5
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 9.2e-47 192.2 461 34.9
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 9.2e-47 192.2 461 34.9
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.0e-46 191.0 471 34.0
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 3.0e-45 187.2 546 33.7
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 6.6e-45 186.0 548 33.9
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.9e-44 184.5 456 37.9
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 4.3e-44 183.3 538 34.4
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.6e-43 181.4 470 35.3
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.8e-43 180.6 541 34.0
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.6e-43 180.3 571 32.7
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 6.2e-43 179.5 421 35.2
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 6.8e-42 176.0 470 35.5
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.4e-39 168.3 411 34.8
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 2.0e-38 164.5 220 51.4
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 3.5e-38 163.7 452 34.1
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.5e-36 158.3 303 40.3
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 5.6e-36 156.4 468 33.5
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 6.8e-34 149.4 472 30.5
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 8.9e-34 149.1 209 46.4
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 4.4e-33 146.7 448 31.9
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 6.4e-32 142.9 497 29.4
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.1e-30 137.9 182 52.2
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 8.6e-29 132.5 552 27.5
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 6.2e-27 126.3 552 27.9
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.6e-25 120.9 463 30.9
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 4.9e-24 116.7 479 29.0
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.9e-23 114.8 368 28.3
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.2e-22 112.1 566 28.4
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.3e-21 108.6 472 26.5
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.3e-20 103.6 59 84.7
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.1e-18 99.0 99 57.6
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 9.9e-17 92.4 459 27.9
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 8.4e-08 62.8 82 51.2
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.1e-07 62.4 181 33.1
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 2.4e-07 61.2 55 58.2


User provided reference genes

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