Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 1.1e-223 779.6 386 100.0
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 8.7e-165 583.9 379 79.9
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 1.1e-159 567.0 380 75.8
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 2.2e-152 542.7 380 72.9
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 1.1e-151 540.4 374 73.3
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 1.4e-151 540.0 380 72.1
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 3.2e-151 538.9 387 72.6
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 5.5e-151 538.1 379 72.0
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 7.9e-150 534.3 378 72.0
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 1.4e-149 533.5 381 71.4
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 3.9e-149 531.9 368 73.4
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 3.9e-149 531.9 378 72.8
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 8.8e-149 530.8 379 71.2
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 1.5e-148 530.0 378 70.6
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 2.0e-148 529.6 371 72.8
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 3.3e-148 528.9 368 72.6
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 3.3e-148 528.9 379 70.7
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 4.4e-148 528.5 380 71.3
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 1.3e-147 526.9 399 67.9
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 1.3e-147 526.9 378 70.1
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 3.7e-147 525.4 379 69.1
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 4.8e-147 525.0 381 71.4
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 1.4e-146 523.5 379 71.5
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 1.8e-146 523.1 374 71.7
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 2.4e-146 522.7 374 71.7
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 2.4e-146 522.7 379 70.2
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 3.1e-146 522.3 378 69.6
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 4.1e-146 521.9 378 70.1
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 5.3e-146 521.5 380 69.7
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 5.3e-146 521.5 379 69.9
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 5.3e-146 521.5 379 69.9
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 9.1e-146 520.8 379 70.7
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 1.2e-145 520.4 380 70.8
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 2.0e-145 519.6 385 67.5
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 2.6e-145 519.2 374 70.6
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 4.5e-145 518.5 379 69.7
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 5.9e-145 518.1 377 70.0
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 7.7e-145 517.7 378 68.8
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 1.0e-144 517.3 378 69.8
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 1.0e-144 517.3 374 70.6
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 1.0e-144 517.3 374 71.4
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 3.8e-144 515.4 374 69.3
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 6.5e-144 514.6 371 70.1
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 8.5e-144 514.2 374 69.5
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 1.1e-143 513.8 382 69.4
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 1.1e-143 513.8 374 69.0
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 1.1e-143 513.8 420 66.0
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.5e-143 513.5 374 69.0
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 1.5e-143 513.5 374 69.5
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 3.2e-143 512.3 374 69.0
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 5.5e-143 511.5 379 69.4
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 7.2e-143 511.1 374 69.5
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 7.2e-143 511.1 373 69.4
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.2e-142 510.4 374 68.7
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 1.6e-142 510.0 382 68.8
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 1.6e-142 510.0 383 67.9
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.6e-142 510.0 378 68.0
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 3.6e-142 508.8 374 68.4
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 4.7e-142 508.4 368 71.5
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 4.7e-142 508.4 374 69.0
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 6.1e-142 508.1 374 69.5
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 1.4e-141 506.9 374 69.0
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 1.8e-141 506.5 380 67.4
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 5.2e-141 505.0 371 68.5
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 6.7e-141 504.6 380 68.2
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 8.8e-141 504.2 371 68.7
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 8.8e-141 504.2 374 67.9
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 1.5e-140 503.4 385 67.5
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 2.0e-140 503.1 382 67.0
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 3.3e-140 502.3 379 67.5
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 7.5e-140 501.1 374 67.9
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 1.3e-139 500.4 385 66.2
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 1.7e-139 500.0 377 67.1
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 4.8e-139 498.4 382 66.5
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 1.8e-138 496.5 384 65.9
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 1.8e-138 496.5 368 68.8
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 2.4e-138 496.1 377 66.0
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 3.1e-138 495.7 374 66.3
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 3.1e-138 495.7 373 66.2
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 5.3e-138 495.0 441 61.0
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 1.2e-137 493.8 379 67.8
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 1.2e-137 493.8 374 67.6
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 1.6e-137 493.4 371 67.4
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 2.7e-137 492.7 370 66.5
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 2.7e-137 492.7 370 66.5
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 3.5e-137 492.3 374 66.3
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 4.5e-137 491.9 370 66.8
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 4.5e-137 491.9 374 66.3
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 7.7e-137 491.1 368 67.4
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 1.0e-136 490.7 374 65.8
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 1.0e-136 490.7 374 65.8
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 1.3e-136 490.3 377 65.5
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 2.2e-136 489.6 385 64.7
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 5.0e-136 488.4 379 65.2
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 5.0e-136 488.4 377 67.9
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 8.5e-136 487.6 374 65.8
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 8.5e-136 487.6 371 67.4
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 1.1e-135 487.3 370 66.8
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 5.5e-135 485.0 382 64.4
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 2.1e-134 483.0 371 65.5
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 6.8e-133 478.0 374 65.5
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 2.0e-132 476.5 386 64.2
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 3.4e-132 475.7 370 66.5
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 1.3e-131 473.8 381 64.8
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 4.8e-131 471.9 361 67.6
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 3.1e-130 469.2 362 64.6
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 5.4e-130 468.4 381 64.3
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 5.4e-130 468.4 392 63.5
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 7.0e-130 468.0 429 59.7
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 9.5e-127 457.6 374 60.2
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 1.4e-125 453.8 379 59.4
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 6.8e-125 451.4 383 61.9
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 1.2e-124 450.7 377 61.3
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 9.2e-122 441.0 366 61.5
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 2.9e-120 436.0 381 58.0
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 8.6e-120 434.5 351 63.8
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 3.6e-118 429.1 380 61.1
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 1.1e-111 407.5 365 57.8
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 1.5e-108 397.1 367 56.7
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 8.6e-104 381.3 371 54.2
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 3.4e-100 369.4 349 58.2
BcaB05g22835 Brassica carinata HOM05D005173 ORTHO05D006214 4.6e-97 359.0 292 62.7
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 1.3e-96 357.5 298 62.4
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 4.4e-92 342.4 364 50.3
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 1.9e-90 337.0 285 63.5
QL02p061362 Quercus lobata HOM05D005173 ORTHO05D006214 1.0e-88 331.3 252 67.5
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 5.2e-85 318.9 365 48.5
TPR.G9429 Trifolium pratense HOM05D005173 ORTHO05D006214 2.1e-78 297.0 186 78.0
HPP92_009230 Vanilla planifolia HOM05D005173 ORTHO05D006214 3.9e-72 276.2 185 74.1
Rhsim03G0230600 Rhododendron simsii HOM05D005173 ORTHO05D006214 1.4e-69 267.7 270 53.7
TPR.G23232 Trifolium pratense HOM05D005173 ORTHO05D006214 1.9e-58 230.7 131 80.9
HPP92_009231 Vanilla planifolia HOM05D005173 ORTHO05D006214 5.1e-56 222.6 137 70.8
BNapus_Darmor_BZH_scaffold_38p01550 Brassica napus HOM05D005173 ORTHO05D006214 2.4e-45 187.2 116 78.4
Cre03.g160100 Chlamydomonas reinhardtii HOM05D005173 ORTHO05D006214 7.7e-44 182.2 368 33.4
SGA_v2.0_scaffold23G10070 Striga asiatica HOM05D005173 ORTHO05D006214 2.2e-30 137.5 118 61.0
Cfa026742 Carpinus fangiana HOM05D005173 ORTHO05D006214 9.4e-26 122.1 368 29.6
ClCG07G005020 Citrullus lanatus HOM05D005173 ORTHO05D006214 7.5e-23 112.5 77 74.0
Hma1.2p1_0440F.1_g153610 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 5.0e-19 99.8 78 61.5
PRCOL_00002900 Prasinoderma coloniale HOM05D005173 ORTHO05D006214 3.2e-18 97.1 362 26.2
CSS0040146 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 3.6e-17 93.6 54 75.9
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 5.2e-16 89.7 57 73.7
Lsat_1_v5_gn_5_98841 Lactuca sativa HOM05D005173 ORTHO05D006214 1.8e-13 81.3 74 54.1
Nn2g12540 Nelumbo nucifera HOM05D005173 ORTHO05D006214 3.8e-11 73.6 46 65.2
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 4.2e-10 70.1 62 62.9
MCO15G111 Micromonas commoda HOM05D005173 ORTHO05D006214 4.0e-08 63.5 164 30.5
SEGI_17932 Sequoiadendron giganteum HOM05D005173 ORTHO05D006214 1.2e-07 62.0 42 71.4


User provided reference genes

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