Gene: Lsat_1_v5_gn_5_142000

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_5_142000
  • Transcript Identifier Lsat_1_v5_gn_5_142000.3
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_5 : 271465852-271476337 : positive

Gene Family Information

  • ID HOM05D005173
  • #Genes/#Species 146/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_5_142000.v5
  • pacid 38965892

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
InterProproteolysis
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT5G20520
GO:0009958
ISO
PLAZA Integrative Orthologypositive gravitropism AT5G20520
GO:0009638
ISO
PLAZA Integrative Orthologyphototropism AT5G20520
GO:0009415
ISO
PLAZA Integrative Orthologyresponse to water AT5G20520

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008236
IEA
InterProserine-type peptidase activity
GO:0042393
IEA
InterProhistone binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G20520
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G20520
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT5G20520
GO:0005783
ISO
PLAZA Integrative Orthologyendoplasmic reticulum AT5G20520
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT5G20520
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G20520
GO:0019866
ISO
PLAZA Integrative Orthologyorganelle inner membrane AT5G20520

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019787 Zinc finger, PHD-finger
IPR029058 Alpha/Beta hydrolase fold
IPR011011 Zinc finger, FYVE/PHD-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR044104 Alfin1-like, PHD finger
IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain
IPR021998 Alfin, N-terminal
IPR001965 Zinc finger, PHD-type
Mapman id Description
12.3.6.2.2 Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.associated factors.methylation reader (Alfin)