Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 0.0e+00 1286.2 630 100.0
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 0.0e+00 1199.5 591 99.3
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 3.2e-281 971.5 625 76.5
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 9.9e-275 949.9 625 73.1
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 1.9e-273 945.7 627 73.5
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 3.2e-273 944.9 627 73.4
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 2.1e-272 942.2 625 73.0
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 1.3e-271 939.5 625 73.1
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 3.0e-271 938.3 625 72.8
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 9.6e-270 933.3 588 76.9
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 5.3e-268 927.5 627 71.9
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 9.0e-268 926.8 625 72.2
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.2e-267 926.4 625 72.6
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 4.5e-267 924.5 625 72.3
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.5e-267 924.5 625 72.3
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 7.6e-267 923.7 627 72.4
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 3.8e-266 921.4 625 71.8
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.8e-266 921.4 625 71.8
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.4e-265 919.5 625 72.0
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 1.9e-265 919.1 625 72.0
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 4.6e-264 914.4 625 71.4
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 6.0e-264 914.1 625 71.5
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.3e-263 912.9 625 71.2
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 1.8e-263 912.5 625 71.0
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 8.1e-261 903.7 625 70.1
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.4e-259 898.3 636 69.5
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 3.4e-259 898.3 628 69.1
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 4.5e-259 897.9 625 68.6
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 1.3e-258 896.3 625 68.6
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 4.9e-258 894.4 589 73.7
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 6.5e-258 894.0 625 69.6
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.1e-257 893.3 625 69.3
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 3.2e-257 891.7 589 74.2
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 3.2e-257 891.7 625 68.5
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 7.1e-257 890.6 625 69.8
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.7e-256 888.6 625 70.1
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 4.6e-256 887.9 625 69.8
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 4.6e-256 887.9 628 68.6
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 6.0e-256 887.5 625 68.3
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 7.9e-256 887.1 623 69.3
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 7.9e-256 887.1 625 67.8
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 2.3e-255 885.6 625 68.0
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 3.0e-255 885.2 628 68.3
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.5e-254 882.9 626 67.6
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 7.4e-254 880.6 587 71.2
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.3e-253 879.8 589 71.6
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 4.8e-253 877.9 625 66.9
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 6.2e-253 877.5 625 66.9
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 8.2e-253 877.1 541 78.9
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.4e-252 876.3 625 66.9
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 2.4e-252 875.5 591 72.1
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.2e-251 873.2 625 68.5
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 2.0e-251 872.5 625 66.6
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 2.0e-251 872.5 624 68.1
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.6e-251 872.1 625 66.6
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 2.6e-251 872.1 625 67.0
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 5.8e-251 870.9 625 66.2
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.8e-251 870.9 591 71.1
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.3e-250 869.8 627 69.1
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.7e-250 869.4 625 66.6
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 3.8e-250 868.2 625 68.2
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 5.0e-250 867.8 625 66.2
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.1e-249 866.7 629 69.0
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.4e-249 866.3 629 66.6
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 2.5e-249 865.5 588 70.2
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 4.2e-249 864.8 625 66.2
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 2.1e-248 862.4 597 69.2
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 4.6e-248 861.3 625 67.5
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 4.6e-248 861.3 625 67.4
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 2.3e-247 859.0 590 69.8
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 2.5e-246 855.5 627 65.9
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.3e-246 855.1 626 66.3
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 2.4e-244 849.0 455 92.1
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.1e-244 848.6 589 68.6
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 3.4e-243 845.1 638 64.3
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 4.5e-243 844.7 562 72.4
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.2e-241 838.6 591 70.9
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 7.2e-241 837.4 614 67.8
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 2.1e-240 835.9 625 65.9
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.4e-239 833.2 633 63.7
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.7e-237 826.2 591 70.4
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 3.7e-237 825.1 633 66.2
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 3.9e-231 805.1 563 68.0
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 8.8e-231 803.9 633 61.1
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 2.0e-230 802.7 629 60.7
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 8.2e-229 797.3 632 63.3
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 2.4e-228 795.8 593 66.3
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 4.1e-228 795.0 793 54.5
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.0e-227 792.7 592 64.9
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 4.2e-225 785.0 589 65.7
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 3.3e-222 775.4 541 68.0
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.8e-220 769.6 505 73.1
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 6.3e-213 744.6 555 67.2
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 8.0e-208 727.6 489 71.4
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 6.3e-205 718.0 775 49.9
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 4.3e-193 678.7 593 60.4
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 7.5e-190 667.9 787 50.2
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 5.8e-166 588.6 650 46.9
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 6.4e-157 558.5 604 46.5
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 2.3e-154 550.1 362 72.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 5.6e-153 545.4 353 71.1
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 1.0e-141 508.1 498 50.4
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 1.5e-105 387.9 265 67.2
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.0e-105 387.5 290 65.5
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 6.3e-104 382.5 284 63.0
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.2e-93 347.4 225 78.2
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 6.5e-93 345.9 254 66.9
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 5.7e-81 306.2 290 56.6
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.5e-60 237.7 166 74.1
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 2.5e-60 237.7 149 70.5
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 2.1e-54 218.0 164 61.0
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 6.6e-53 213.0 181 55.2
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 8.4e-40 169.5 154 57.1
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 6.9e-34 149.8 153 47.7
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.0e-33 148.3 153 46.4
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.6e-33 147.9 153 47.7
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 6.7e-29 133.3 152 44.7
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 4.3e-28 130.6 102 63.7
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 5.6e-28 130.2 98 66.3
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-28 129.4 169 39.1
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.8e-27 127.1 112 55.4
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 8.1e-27 126.3 98 65.3
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.8e-26 125.2 107 60.7
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.8e-24 117.5 98 56.1
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 3.2e-23 114.4 109 51.4
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-22 112.5 73 71.2
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 3.5e-22 110.9 66 77.3
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 2.3e-21 108.2 87 65.5
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 6.7e-21 106.7 109 49.5
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 8.7e-21 106.3 61 78.7
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.9e-20 105.1 109 48.6
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 2.4e-18 98.2 83 57.8
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 3.2e-15 87.8 75 60.0
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 4.2e-15 87.4 77 53.2
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 9.3e-15 86.3 79 58.2
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.0e-13 82.8 129 38.8
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 1.0e-13 82.8 55 70.9
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.1e-12 79.3 57 63.2
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.5e-12 78.2 70 57.1
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 4.3e-12 77.4 54 66.7
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-12 77.0 93 43.0
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.2e-11 75.1 89 46.1
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.2e-11 75.1 64 60.9
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 8.2e-11 73.2 62 56.5
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 8.2e-11 73.2 62 56.5
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.4e-10 72.4 129 32.6
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 5.3e-10 70.5 485 20.4
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.0e-08 66.2 48 66.7
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 5.0e-08 63.9 87 47.1
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 4.2e-07 60.8 74 45.9
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.6e-06 57.4 33 72.7


User provided reference genes

Program Settings