Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 0.0e+00 1331.6 647 100.0
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 0.0e+00 1306.6 647 97.8
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 0.0e+00 1136.7 652 84.4
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 0.0e+00 1129.8 651 83.4
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1124.0 652 81.7
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 0.0e+00 1124.0 652 81.7
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 0.0e+00 1123.6 652 83.0
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 0.0e+00 1120.5 652 81.3
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 0.0e+00 1119.4 652 82.4
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 0.0e+00 1115.9 653 82.7
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 0.0e+00 1113.2 652 81.4
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1112.4 652 80.8
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 0.0e+00 1110.9 658 81.8
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 0.0e+00 1109.7 661 82.9
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 0.0e+00 1109.0 652 81.6
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1104.7 656 82.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 0.0e+00 1104.4 657 82.0
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 0.0e+00 1103.2 652 81.6
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 0.0e+00 1098.6 654 80.0
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 0.0e+00 1097.8 653 80.1
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 0.0e+00 1097.0 652 80.8
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 0.0e+00 1097.0 656 80.6
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1095.9 652 80.7
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 0.0e+00 1094.7 653 79.8
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 0.0e+00 1093.6 705 76.7
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 0.0e+00 1092.4 655 79.4
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 0.0e+00 1091.6 652 79.6
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1091.3 651 80.5
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1091.3 652 80.4
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 0.0e+00 1091.3 653 79.5
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1087.8 652 80.1
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1085.1 652 81.0
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1080.9 653 78.4
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 0.0e+00 1078.2 652 78.1
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 0.0e+00 1077.4 652 78.4
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1076.6 652 78.2
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 4.4e-312 1074.7 652 77.8
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 4.4e-312 1073.9 653 78.6
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 8.9e-312 1073.2 652 77.9
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 1.3e-311 1072.4 652 78.7
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.1e-311 1071.2 652 77.9
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 3.1e-311 1071.2 654 78.4
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 4.0e-311 1070.8 652 78.1
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 4.0e-311 1070.8 653 78.1
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 6.6e-311 1070.1 652 78.1
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 8.9e-311 1069.7 656 78.7
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 8.9e-311 1069.7 656 78.7
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.9e-310 1068.5 653 77.6
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.9e-310 1068.5 654 78.7
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 2.6e-310 1068.1 656 79.1
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 5.7e-310 1067.0 655 78.9
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 9.7e-310 1066.2 652 77.5
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.7e-309 1065.4 652 77.8
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 8.2e-309 1063.1 652 77.3
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 8.2e-309 1063.1 652 77.3
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 3.1e-308 1061.2 652 78.4
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 4.1e-308 1060.8 605 83.6
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 7.0e-308 1060.1 652 77.1
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.6e-307 1058.9 652 77.0
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 2.9e-306 1054.7 652 76.7
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 5.0e-306 1053.9 679 74.7
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 8.5e-306 1053.1 657 77.2
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.1e-305 1052.7 657 76.7
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.9e-305 1052.0 659 76.6
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 4.2e-305 1050.8 657 77.2
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 5.5e-305 1050.4 654 76.3
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 1.6e-304 1048.9 658 76.9
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 2.1e-304 1048.5 655 77.6
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 6.1e-304 1047.0 655 77.3
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 2.3e-303 1045.0 681 74.6
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 3.0e-303 1044.6 596 84.7
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 4.0e-303 1044.3 652 78.1
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 8.8e-303 1043.1 656 76.2
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.2e-302 1042.7 678 75.7
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 3.4e-302 1041.2 674 74.9
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 3.4e-302 1041.2 707 72.3
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 3.1e-300 1034.6 657 76.0
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 2.0e-299 1031.9 649 76.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.7e-299 1031.6 668 74.4
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 7.2e-297 1023.5 666 76.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 4.0e-295 1017.7 680 73.2
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 2.2e-293 1011.9 651 74.8
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 6.3e-293 1010.4 661 74.1
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 6.3e-293 1010.4 636 78.1
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 4.1e-292 1007.7 654 74.0
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 9.2e-292 1006.5 656 75.8
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.2e-291 1006.1 682 72.3
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 5.9e-291 1003.8 682 72.1
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.3e-287 991.9 705 69.4
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 2.2e-285 985.3 680 71.8
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 1.1e-284 983.0 659 71.3
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 1.6e-283 979.2 657 71.2
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 7.3e-281 970.3 594 78.8
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 7.3e-281 970.3 667 70.3
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.2e-278 963.0 549 83.2
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 5.4e-276 954.1 657 69.7
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.6e-275 952.6 657 68.6
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.0e-274 949.9 634 74.4
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 7.3e-273 943.7 567 79.2
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 4.0e-271 937.9 652 69.5
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.5e-270 936.0 698 67.2
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 4.4e-270 934.5 567 78.7
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.7e-269 932.6 669 67.4
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.9e-268 929.1 669 67.4
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 6.0e-267 924.1 801 60.7
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.9e-265 919.1 655 69.3
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 4.3e-265 917.9 659 69.3
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.5e-265 916.8 664 67.2
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 3.2e-260 901.7 667 66.1
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 4.6e-259 897.9 531 79.3
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.0e-258 895.2 665 65.7
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 5.3e-247 857.8 596 73.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 5.3e-247 857.8 664 63.6
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 3.4e-246 855.1 501 81.2
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 1.7e-245 852.8 869 54.8
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.2e-243 846.7 652 63.7
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.7e-243 845.5 475 84.8
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 2.5e-233 812.4 641 62.6
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 3.5e-227 792.0 528 74.4
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 6.3e-224 781.2 665 59.8
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 4.1e-199 698.7 656 55.0
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.8e-192 675.2 502 68.3
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-180 637.5 660 52.3
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 1.9e-180 636.7 709 47.0
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 5.5e-180 635.2 389 78.7
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.7e-179 632.1 652 52.9
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 9.8e-177 624.4 633 51.2
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 2.8e-176 622.9 667 50.2
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.9e-173 612.8 510 60.2
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 5.0e-173 612.1 337 86.4
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 1.6e-158 563.9 336 79.8
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 3.0e-157 559.7 674 47.0
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.3e-149 534.3 320 79.4
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.4e-146 523.5 651 47.3
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.5e-145 520.8 366 69.9
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.5e-137 494.2 276 83.7
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.9e-127 460.7 342 69.0
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.5e-126 456.4 651 41.8
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.4e-119 434.5 274 77.0
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.5e-119 433.7 651 40.4
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.6e-115 421.0 309 71.5
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.1e-114 418.3 384 59.6
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.7e-99 367.9 233 75.1
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 2.2e-80 304.3 433 40.4
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 6.1e-78 296.2 501 39.9
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 3.0e-77 293.9 654 31.8
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.6e-76 290.8 493 38.1
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 4.4e-76 290.0 229 62.4
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.8e-74 284.6 307 51.8
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.2e-73 282.0 233 59.7
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.1e-66 255.8 201 61.7
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 1.3e-64 251.9 563 35.9
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.2e-58 230.7 274 46.4
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 3.6e-46 190.7 138 71.7
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.1e-40 170.2 144 65.3
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 2.1e-33 148.3 108 67.6
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.1e-29 136.0 112 61.6
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 2.0e-28 131.7 229 39.3
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 1.4e-26 125.6 126 51.6
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 2.1e-25 121.7 64 85.9
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 3.0e-24 117.9 59 81.4
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 5.1e-24 117.1 80 68.8
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 9.6e-23 112.8 61 75.4
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 9.6e-23 112.8 129 48.8
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 1.5e-20 105.5 88 58.0
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 4.4e-20 104.0 69 66.7
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 2.4e-18 98.2 159 37.1
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 3.9e-16 90.9 65 70.8
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.9e-15 88.6 50 82.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 1.3e-14 85.9 76 57.9
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.3e-14 85.9 53 77.4
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 4.8e-14 84.0 50 74.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 4.5e-12 77.4 45 86.7
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 6.4e-11 73.6 44 75.0
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 1.9e-10 72.0 74 52.7
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 4.2e-10 70.9 79 48.1
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 7.1e-10 70.1 42 76.2
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 3.5e-09 67.8 52 69.2
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 7.9e-09 66.6 42 71.4
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.0e-08 64.7 48 58.3
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 1.1e-07 62.8 48 62.5
Atru.chr7.1233 Acer truncatum HOM05D000639 ORTHO05D005966 5.6e-07 60.5 277 25.6
MCO03G234 Micromonas commoda HOM05D000639 ORTHO05D006731 7.4e-07 60.1 259 25.1
Sc13g0003460 Simmondsia chinensis HOM05D000639 ORTHO05D004019 2.1e-06 58.5 260 26.2
AagrBONN_evm.TU.Sc2ySwM_228.3515 Anthoceros agrestis HOM05D000639 ORTHO05D004019 4.8e-06 57.4 300 26.7
Glyma.06G215400 Glycine max HOM05D000639 ORTHO05D005966 6.2e-06 57.0 284 25.4


User provided reference genes

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