Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 8.9e-177 623.6 343 100.0
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 1.5e-171 606.3 343 97.4
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 6.2e-146 521.2 347 85.9
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.5e-88 330.5 348 56.9
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 4.2e-86 322.4 347 55.0
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 3.0e-84 316.2 346 56.4
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.0e-80 303.5 354 53.1
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 3.8e-79 299.3 352 54.0
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 3.8e-79 299.3 346 52.3
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.6e-77 293.9 348 52.9
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 4.7e-77 292.4 395 48.4
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 6.1e-77 292.0 347 52.2
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 2.3e-76 290.0 346 51.4
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 8.8e-76 288.1 346 51.2
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.5e-75 287.3 348 52.0
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 1.5e-75 287.3 343 54.2
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 2.6e-75 286.6 344 51.7
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 2.6e-75 286.6 343 54.2
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 1.3e-74 284.3 349 53.6
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 2.2e-74 283.5 346 52.0
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 4.8e-74 282.3 388 48.5
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 4.8e-74 282.3 349 53.0
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 8.3e-74 281.6 343 53.6
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.4e-73 280.8 349 51.9
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 4.1e-73 279.3 346 50.3
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 4.1e-73 279.3 352 53.7
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 9.1e-73 278.1 345 51.6
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.7e-72 276.6 346 52.3
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 2.7e-72 276.6 348 50.3
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.0e-71 274.6 348 53.7
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.3e-71 274.2 348 52.9
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.2e-71 273.5 308 52.6
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 3.8e-71 272.7 349 51.0
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 5.0e-71 272.3 347 53.6
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 1.1e-70 271.2 343 52.5
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.5e-70 270.8 418 46.4
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.5e-70 270.0 355 48.5
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 4.2e-70 269.2 349 53.3
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 5.5e-70 268.9 345 48.1
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 1.2e-69 267.7 347 51.6
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 2.1e-69 266.9 346 50.3
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.1e-69 266.9 346 50.6
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 6.1e-69 265.4 348 52.3
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 8.0e-69 265.0 305 52.8
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 4.0e-68 262.7 308 51.9
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 5.2e-68 262.3 349 49.0
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 2.0e-67 260.4 344 48.3
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.4e-65 254.2 346 48.3
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.8e-65 253.8 370 45.7
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 1.8e-65 253.8 348 50.3
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.4e-65 253.4 341 48.4
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 3.5e-64 249.6 341 47.2
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 5.9e-64 248.8 346 46.8
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 7.7e-64 248.4 345 49.9
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 7.7e-64 248.4 351 45.6
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 1.3e-63 247.7 379 49.1
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 8.6e-63 245.0 364 45.6
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.1e-62 244.6 345 46.4
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 2.5e-62 243.4 342 47.7
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 9.5e-62 241.5 347 48.1
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 1.6e-61 240.7 344 50.0
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 6.8e-60 235.3 346 45.7
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.2e-59 234.6 383 44.4
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.5e-59 231.9 349 45.6
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 2.2e-58 230.3 350 44.9
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 3.7e-58 229.6 343 48.1
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 4.9e-58 229.2 291 49.5
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.4e-57 227.6 385 45.2
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 7.0e-57 225.3 295 48.1
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 9.2e-57 224.9 311 47.9
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.6e-56 224.2 272 54.4
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 7.8e-56 221.9 314 45.9
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 2.9e-55 219.9 288 52.8
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.8e-53 213.4 286 54.9
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.8e-52 210.7 267 50.9
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.8e-51 204.9 286 46.5
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 1.4e-49 201.1 343 43.4
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 7.0e-49 198.7 389 40.9
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 3.5e-48 196.4 393 36.1
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 6.0e-48 195.7 354 43.8
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 7.8e-48 195.3 396 38.9
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.0e-47 194.9 433 38.6
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 6.6e-47 192.2 382 39.3
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 1.5e-46 191.0 342 42.7
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 9.5e-46 188.3 435 38.2
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.8e-45 186.8 437 38.7
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 2.6e-43 180.3 351 43.6
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 3.7e-42 176.4 380 38.2
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.4e-41 174.5 394 36.5
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 7.1e-41 172.2 151 64.9
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 2.1e-40 170.6 281 44.1
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 2.1e-40 170.6 281 44.1
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 2.7e-40 170.2 398 37.7
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 4.6e-40 169.5 285 43.2
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 3.0e-39 166.8 278 42.4
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 3.9e-39 166.4 278 41.7
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 6.6e-39 165.6 189 56.6
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.9e-38 164.1 239 44.8
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.5e-38 163.7 274 43.8
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 1.6e-37 161.0 248 44.4
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 2.1e-37 160.6 282 43.3
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 2.1e-37 160.6 282 43.3
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 4.4e-35 152.9 300 38.3
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 3.7e-34 149.8 275 40.4
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.4e-33 147.9 158 56.3
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.2e-32 144.8 152 54.6
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 1.5e-30 137.9 277 36.1
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 2.5e-30 137.1 293 38.2
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 2.5e-30 137.1 157 58.0
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 4.3e-30 136.3 283 36.7
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.8e-29 133.7 143 57.3
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.4e-28 131.3 148 55.4
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 3.1e-28 130.2 342 36.3
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-25 121.7 110 65.5
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-25 121.7 110 65.5
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 4.2e-25 119.8 124 62.9
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 3.9e-23 113.2 103 65.0
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 1.8e-20 104.4 140 48.6
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 4.9e-18 96.3 78 64.1
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 6.4e-18 95.9 76 65.8
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.4e-17 94.0 149 38.3
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.7e-16 90.5 142 43.0
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 4.6e-16 89.7 118 43.2
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 3.3e-14 83.6 129 41.9
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.8e-13 80.5 85 55.3
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 1.9e-09 67.8 91 45.1
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.2e-08 65.1 105 40.0
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.2e-08 65.1 105 40.0
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 1.8e-07 61.2 249 29.7
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 2.3e-07 60.8 167 37.7


User provided reference genes

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