Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0299000 Salix brachista HOM05D002138 ORTHO05D002106 1.6e-66 256.1 152 100.0
Cpa.g.sc832.2 Carica papaya HOM05D002138 ORTHO05D002106 5.7e-35 151.4 135 78.5
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 4.8e-34 148.3 131 78.6
Sabra16G0300900 Salix brachista HOM05D002138 ORTHO05D002106 6.3e-34 147.9 101 78.2
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 3.5e-32 142.1 137 74.5
Potri.001G442400 Populus trichocarpa HOM05D002138 ORTHO05D002106 2.2e-31 139.4 172 61.6
HanXRQChr12g0358431 Helianthus annuus HOM05D002138 ORTHO05D002106 8.5e-31 137.5 138 73.2
BolC7t45586H Brassica oleracea HOM05D002138 ORTHO05D002106 1.5e-30 136.7 157 50.3
Potri.011G154800 Populus trichocarpa HOM05D002138 ORTHO05D002106 1.5e-30 136.7 166 62.0
Aa31LG6G2770 Aethionema arabicum HOM05D002138 ORTHO05D002106 1.2e-29 133.7 141 70.9
Thhalv10026533m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 1.2e-29 133.7 137 71.5
BcaC09g51342 Brassica carinata HOM05D002138 ORTHO05D002106 1.6e-29 133.3 144 69.4
C01p14370 Brassica napus HOM05D002138 ORTHO05D002106 1.6e-29 133.3 144 69.4
BolC1t01395H Brassica oleracea HOM05D002138 ORTHO05D002106 1.6e-29 133.3 144 69.4
FAN21G3756 Fragaria x ananassa HOM05D002138 ORTHO05D002106 2.1e-29 132.9 133 73.7
vmacro10995 Vaccinium macrocarpon HOM05D002138 ORTHO05D002106 6.1e-29 131.3 149 67.1
Ciclev10016959m.g Citrus clementina HOM05D002138 ORTHO05D002106 5.2e-28 128.3 168 60.1
Duzib235G1231 Durio zibethinus HOM05D002330 ORTHO05D002411 1.2e-27 127.1 175 57.1
COL.COLO4_26865 Corchorus olitorius HOM05D002330 ORTHO05D002411 3.4e-27 125.6 168 57.7
CSS0019083 Camellia sinensis var. sinensis HOM05D002138 ORTHO05D002106 1.1e-25 120.6 174 55.7
Psat7g060840 Pisum sativum HOM05D002138 ORTHO05D002106 1.4e-25 120.2 136 69.1
Prupe.4G102000 Prunus persica HOM05D002138 ORTHO05D002106 1.4e-25 120.2 168 57.7
MD10G1241200 Malus domestica HOM05D002138 ORTHO05D002106 1.8e-25 119.8 178 56.2
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 3.1e-25 119.0 137 51.1
Gohir.D06G219400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 9.1e-25 117.5 167 56.9
Sed0010270 Sechium edule HOM05D002138 ORTHO05D002106 9.1e-25 117.5 169 56.8
CANSAT35G1191 Cannabis sativa HOM05D002138 ORTHO05D002106 1.2e-24 117.1 172 57.0
Thecc.06G005100 Theobroma cacao HOM05D002138 ORTHO05D002106 1.2e-24 117.1 168 56.0
Atru.chr10.656 Acer truncatum HOM05D002330 ORTHO05D002411 3.5e-24 115.5 181 54.1
Gohir.A06G202300 Gossypium hirsutum HOM05D002138 ORTHO05D002106 3.5e-24 115.5 167 56.9
Oeu052706.2 Olea europaea HOM05D002138 ORTHO05D002106 4.5e-24 115.2 140 65.7
Sed0010165 Sechium edule HOM05D002330 ORTHO05D002411 5.9e-24 114.8 168 55.4
Dinv11971 Davidia involucrata HOM05D002138 ORTHO05D002106 1.7e-23 113.2 174 54.6
Gorai.010G246900 Gossypium raimondii HOM05D002138 ORTHO05D002106 1.7e-23 113.2 178 53.9
ClCG01G025450 Citrullus lanatus HOM05D002138 ORTHO05D002106 2.2e-23 112.8 169 55.6
CsaV3_6G052700 Cucumis sativus L. HOM05D002138 ORTHO05D002106 2.2e-23 112.8 169 55.6
Gohir.D10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.9e-23 112.5 168 54.2
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 2.9e-23 112.5 127 66.1
Manes.03G069700 Manihot esculenta HOM05D002138 ORTHO05D002106 3.8e-23 112.1 172 54.7
CiPaw.10G111300 Carya illinoinensis HOM05D002138 ORTHO05D002106 5.0e-23 111.7 168 54.8
Gohir.A10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 5.0e-23 111.7 168 54.2
Manes.16G062400 Manihot esculenta HOM05D002138 ORTHO05D002106 5.0e-23 111.7 172 54.7
Gorai.011G005300 Gossypium raimondii HOM05D002138 ORTHO05D002106 8.5e-23 110.9 168 54.2
TPR.G6267 Trifolium pratense HOM05D002138 ORTHO05D002106 8.5e-23 110.9 174 53.4
AT4G20380 Arabidopsis thaliana HOM05D002138 ORTHO05D002106 1.1e-22 110.5 182 52.7
A08p14830 Brassica napus HOM05D002138 ORTHO05D002106 1.1e-22 110.5 141 66.7
THA.LOC104812036 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 1.1e-22 110.5 173 53.8
QL05p063069 Quercus lobata HOM05D002138 ORTHO05D002106 1.5e-22 110.2 172 55.2
AL7G33510 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 2.5e-22 109.4 184 52.2
TWI63G1074 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 2.5e-22 109.4 174 54.0
MD05G1263500 Malus domestica HOM05D002138 ORTHO05D002106 5.5e-22 108.2 176 53.4
Lj4g0018656 Lotus japonicus HOM05D002138 ORTHO05D002106 7.2e-22 107.8 174 54.0
Carub.0007s2078 Capsella rubella HOM05D002138 ORTHO05D002106 9.5e-22 107.5 184 50.5
Haze_05972 Corylus avellana HOM05D002138 ORTHO05D002106 1.2e-21 107.1 168 55.4
CiPaw.09G149400 Carya illinoinensis HOM05D002138 ORTHO05D002106 1.6e-21 106.7 167 54.5
Nn7g37741 Nelumbo nucifera HOM05D002138 ORTHO05D002106 1.6e-21 106.7 172 52.9
Sp2g09350 Schrenkiella parvula HOM05D002138 ORTHO05D002106 1.6e-21 106.7 166 54.8
MSTRG.6246 Avicennia marina HOM05D002138 ORTHO05D002106 3.6e-21 105.5 173 51.4
Sp7g18750 Schrenkiella parvula HOM05D002138 ORTHO05D002106 3.6e-21 105.5 184 50.5
SGA_v2.0_scaffold69G23248 Striga asiatica HOM05D002138 ORTHO05D002106 3.6e-21 105.5 174 53.4
Phvul.002G252000 Phaseolus vulgaris HOM05D002138 ORTHO05D002106 6.1e-21 104.8 174 52.9
PGR083G1218 Punica granatum HOM05D002138 ORTHO05D002106 8.0e-21 104.4 172 52.9
RhsimUnG0090000 Rhododendron simsii HOM05D002138 ORTHO05D002106 8.0e-21 104.4 171 53.8
CDE02G0016 Ceratophyllum demersum HOM05D002138 ORTHO05D002106 1.0e-20 104.0 172 53.5
Eucgr.A00512 Eucalyptus grandis HOM05D002138 ORTHO05D002106 1.4e-20 103.6 178 52.8
CARHR227210 Cardamine hirsuta HOM05D002138 ORTHO05D002106 1.8e-20 103.2 178 51.7
VMungo0251G0598 Vigna mungo HOM05D002138 ORTHO05D002106 1.8e-20 103.2 174 51.7
BcaC01g00667 Brassica carinata HOM05D002138 ORTHO05D002106 2.3e-20 102.8 160 46.2
A01p12080 Brassica napus HOM05D002138 ORTHO05D002106 2.3e-20 102.8 188 50.0
C07p50880 Brassica napus HOM05D002138 ORTHO05D002106 2.3e-20 102.8 189 48.7
BraA01t01151Z Brassica rapa HOM05D002138 ORTHO05D002106 2.3e-20 102.8 188 50.0
TAR626G1147 Trochodendron aralioides HOM05D002138 ORTHO05D002106 3.0e-20 102.4 177 50.3
Migut.J01511 Erythranthe guttata HOM05D002138 ORTHO05D002106 4.0e-20 102.1 174 51.7
FAN16G0729 Fragaria x ananassa HOM05D000257 ORTHO05D009178 4.0e-20 102.1 173 52.6
unitig_60.g25492 Utricularia gibba HOM05D002138 ORTHO05D002106 5.2e-20 101.7 169 53.8
Rhsim02G0167700 Rhododendron simsii HOM05D002138 ORTHO05D002106 6.8e-20 101.3 171 53.2
ATR1098G036 Amborella trichopoda HOM05D002138 ORTHO05D002106 8.8e-20 100.9 173 51.4
BraA03t14321Z Brassica rapa HOM05D002138 ORTHO05D002106 8.8e-20 100.9 188 48.4
Medtr8g089310 Medicago truncatula HOM05D002138 ORTHO05D002106 8.8e-20 100.9 174 51.1
Ca_17809_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 2.0e-19 99.8 174 51.7
Thhalv10001047m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 2.6e-19 99.4 174 50.6
Lalb_Chr23g0276031 Lupinus albus HOM05D002138 ORTHO05D002106 2.6e-19 99.4 170 50.6
Lalb_Chr12g0204321 Lupinus albus HOM05D002138 ORTHO05D002106 3.4e-19 99.0 173 51.4
GSVIVG01037958001 Vitis vinifera HOM05D002138 ORTHO05D002106 3.4e-19 99.0 169 51.5
BcaB03g11670 Brassica carinata HOM05D002138 ORTHO05D002106 4.4e-19 98.6 169 56.2
Cc06_g12860 Coffea canephora HOM05D002138 ORTHO05D002106 4.4e-19 98.6 179 51.4
MBI18_g28207_MAGBIO Magnolia biondii HOM05D002138 ORTHO05D002106 4.4e-19 98.6 181 50.3
A03p52420 Brassica napus HOM05D002138 ORTHO05D002106 7.5e-19 97.8 189 47.6
Glyma.15G192000 Glycine max HOM05D002138 ORTHO05D002106 9.8e-19 97.4 178 51.1
Lsat_1_v5_gn_5_84081 Lactuca sativa HOM05D002138 ORTHO05D002106 9.8e-19 97.4 175 53.1
Sabra11G0144900 Salix brachista HOM05D002330 ORTHO05D002411 1.3e-18 97.1 207 44.4
TAR629G1185 Trochodendron aralioides HOM05D002138 ORTHO05D002106 1.3e-18 97.1 174 51.7
Aa31LG9G8650 Aethionema arabicum HOM05D002138 ORTHO05D002106 1.7e-18 96.7 175 49.7
Oeu009081.3 Olea europaea HOM05D002138 ORTHO05D002106 2.2e-18 96.3 184 48.9
BolC3t20573H Brassica oleracea HOM05D002138 ORTHO05D002106 2.8e-18 95.9 130 60.8
C07p27430 Brassica napus HOM05D002138 ORTHO05D002106 6.3e-18 94.7 185 48.6
TPR.G625 Trifolium pratense HOM05D002138 ORTHO05D002106 8.3e-18 94.4 138 44.2
arahy.Tifrunner.gnm1.ann1.0BUM6B Arachis hypogaea HOM05D002138 ORTHO05D002106 1.1e-17 94.0 175 48.6
arahy.Tifrunner.gnm1.ann1.0IDF8B Arachis hypogaea HOM05D002138 ORTHO05D002106 1.1e-17 94.0 175 48.6
BcaC06g34539 Brassica carinata HOM05D002138 ORTHO05D002106 1.1e-17 94.0 166 51.8
BolC7t43273H Brassica oleracea HOM05D002138 ORTHO05D002106 1.1e-17 94.0 166 51.8
THA.LOC104812929 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 1.4e-17 93.6 182 47.8
Glyma.09G083500 Glycine max HOM05D002138 ORTHO05D002106 1.8e-17 93.2 174 48.9
SMO358G0140 Selaginella moellendorffii HOM05D002138 ORTHO05D002106 2.4e-17 92.8 174 48.9
AL7G46100 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 3.1e-17 92.4 71 73.2
C03p82900 Brassica napus HOM05D002138 ORTHO05D002106 5.4e-17 91.7 127 61.4
Lsat_1_v5_gn_8_68441 Lactuca sativa HOM05D002138 ORTHO05D002106 5.4e-17 91.7 167 51.5
Lalb_Chr08g0233161 Lupinus albus HOM05D002138 ORTHO05D002106 9.2e-17 90.9 174 49.4
Aqoxy1G01592 Aquilegia oxysepala HOM05D002138 ORTHO05D002106 1.2e-16 90.5 175 48.6
ECA234G3665 Erigeron canadensis HOM05D002895 ORTHO05D003286 1.2e-16 90.5 116 62.1
EL10Ac8g19641 Beta vulgaris HOM05D002138 ORTHO05D002106 2.0e-16 89.7 176 48.3
Glyma.08G129400 Glycine max HOM05D002138 ORTHO05D002106 2.0e-16 89.7 175 48.6
Pp3c11_12260 Physcomitrium patens HOM05D002138 ORTHO05D002106 2.0e-16 89.7 172 49.4
RcHm_v2.0_Chr5g0018361 Rosa chinensis HOM05D002138 ORTHO05D002106 2.0e-16 89.7 166 50.6
Psat1g019560 Pisum sativum HOM05D002138 ORTHO05D002106 2.7e-16 89.4 168 49.4
Gohir.D05G111800 Gossypium hirsutum HOM05D002138 ORTHO05D002106 3.5e-16 89.0 166 49.4
MSTRG.14808 Avicennia marina HOM05D002138 ORTHO05D002106 4.5e-16 88.6 174 47.7
Glyma.U031408 Glycine max HOM05D002138 ORTHO05D002106 4.5e-16 88.6 175 48.0
Gorai.009G116000 Gossypium raimondii HOM05D002138 ORTHO05D002106 7.8e-16 87.8 166 47.6
Lj2C338T15 Lonicera japonica HOM05D002138 ORTHO05D002106 1.0e-15 87.4 180 45.6
Ca_02382_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 1.7e-15 86.7 168 48.2
Oeu063150.1 Olea europaea HOM05D002138 ORTHO05D002106 1.7e-15 86.7 122 55.7
SalBow7G0802 Salvia bowleyana HOM05D002138 ORTHO05D002106 5.0e-15 85.1 175 45.7
Solyc02g069720.3 Solanum lycopersicum HOM05D002138 ORTHO05D002106 6.6e-15 84.7 170 48.2
Sopen02g018840 Solanum pennellii HOM05D002138 ORTHO05D002106 6.6e-15 84.7 170 48.2
HanXRQChr03g0084531 Helianthus annuus HOM05D002138 ORTHO05D002106 1.1e-14 84.0 166 49.4
BraA08t33467Z Brassica rapa HOM05D002138 ORTHO05D002106 1.9e-14 83.2 178 49.4
Nitab4.5_0006863g0020 Nicotiana tabacum HOM05D002138 ORTHO05D002106 2.5e-14 82.8 167 48.5
Pp3c7_12740 Physcomitrium patens HOM05D002138 ORTHO05D002106 2.5e-14 82.8 161 49.7
Medtr2g047838 Medicago truncatula HOM05D002138 ORTHO05D002106 5.6e-14 81.6 171 46.2
PGSC0003DMG400021196 Solanum tuberosum HOM05D002138 ORTHO05D002106 5.6e-14 81.6 170 47.6
MSTRG.16312 Avicennia marina HOM05D002138 ORTHO05D002106 9.5e-14 80.9 173 44.5
Nitab4.5_0000378g0080 Nicotiana tabacum HOM05D002138 ORTHO05D002106 9.5e-14 80.9 45 77.8
HPP92_015683 Vanilla planifolia HOM05D002138 ORTHO05D002106 2.1e-13 79.7 166 48.8
HPP92_016666 Vanilla planifolia HOM05D002138 ORTHO05D002106 8.0e-13 77.8 170 48.8
Oeu000495.1 Olea europaea HOM05D002138 ORTHO05D002106 1.0e-12 77.4 169 44.4
Lsat_1_v5_gn_7_55201 Lactuca sativa HOM05D001519 ORTHO05D001403 1.4e-12 77.0 160 48.8
AagrBONN_evm.TU.Sc2ySwM_362.175 Anthoceros agrestis HOM05D002138 ORTHO05D002106 2.3e-12 76.3 166 45.8
FAN25G1398 Fragaria x ananassa HOM05D002138 ORTHO05D002106 3.0e-12 75.9 77 79.2
Gohir.A05G111400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 4.0e-12 75.5 172 46.5
Migut.M01935 Erythranthe guttata HOM05D002138 ORTHO05D002106 6.8e-12 74.7 175 42.9
MSTRG.7564 Avicennia marina HOM05D002138 ORTHO05D002106 1.2e-11 73.9 179 42.5
Oeu060328.1 Olea europaea HOM05D002138 ORTHO05D002106 1.5e-11 73.6 173 46.8
Os12g0611000 Oryza sativa ssp. japonica HOM05D002138 ORTHO05D002106 1.5e-11 73.6 174 47.7
Zm00001eb050760 Zea mays HOM05D002138 ORTHO05D002106 2.0e-11 73.2 173 45.7
PSO541G1019 Papaver somniferum HOM05D002138 ORTHO05D002106 4.4e-11 72.0 184 46.2
Lalb_Chr07g0185671 Lupinus albus HOM05D002138 ORTHO05D002106 9.8e-11 70.9 173 42.2
TAR075G0006 Trochodendron aralioides HOM05D007781 ORTHO05D002106 9.8e-11 70.9 43 72.1
CAN.G954.16 Capsicum annuum HOM05D002138 ORTHO05D002106 2.9e-10 69.3 170 45.3
PRCOL_00000474 Prasinoderma coloniale HOM05D000558 ORTHO05D001857 4.9e-10 68.6 131 49.6
PSO675G6382 Papaver somniferum HOM05D002138 ORTHO05D002106 6.4e-10 68.2 184 43.5
Lj6g0027782 Lotus japonicus HOM05D002138 ORTHO05D002106 8.3e-10 67.8 180 41.1
TWI15G0245 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 8.3e-10 67.8 250 35.2
Os03g0639600 Oryza sativa ssp. japonica HOM05D002138 ORTHO05D002106 4.1e-09 65.5 185 43.8
DCAR_008280 Daucus carota HOM05D002138 ORTHO05D002106 9.2e-09 64.3 43 65.1
SalBow8G2330 Salvia bowleyana HOM05D002138 ORTHO05D002106 1.6e-08 63.5 56 66.1
SalBow8G3701 Salvia bowleyana HOM05D002138 ORTHO05D002106 1.6e-08 63.5 56 66.1
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 1.6e-08 63.5 42 66.7
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 2.0e-08 63.2 42 66.7
Hund21537 Selenicereus undatus HOM05D002138 ORTHO05D002106 2.0e-08 63.2 62 64.5
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 3.5e-08 62.4 43 62.8
Mapoly0103s0036 Marchantia polymorpha HOM05D002138 ORTHO05D002106 5.9e-08 61.6 124 50.8
Sc22g0001600 Simmondsia chinensis HOM05D002138 ORTHO05D002106 7.8e-08 61.2 170 42.9
HPP92_011023 Vanilla planifolia HOM05D002138 ORTHO05D002106 1.0e-07 60.8 170 42.9
Ah.14g086340 Amaranthus hybridus HOM05D002227 ORTHO05D002337 1.7e-07 60.1 67 58.2
AUR62002695 Chenopodium quinoa HOM05D002138 ORTHO05D002106 1.7e-07 60.1 50 68.0
AUR62030152 Chenopodium quinoa HOM05D002138 ORTHO05D002106 1.7e-07 60.1 51 66.7
Zm00001eb135920 Zea mays HOM05D002138 ORTHO05D002106 1.7e-07 60.1 164 41.5
SGA_v2.0_scaffold298G47631 Striga asiatica HOM05D002138 ORTHO05D002106 2.5e-06 56.2 175 40.6
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 7.3e-06 54.7 96 55.2
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 7.3e-06 54.7 95 54.7


User provided reference genes

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