Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.7e-102 375.9 185 100.0
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.6e-100 369.4 185 97.8
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 4.7e-92 341.3 185 90.8
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 1.5e-85 319.7 181 85.6
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 2.5e-85 318.9 181 84.0
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.1e-84 315.8 181 81.8
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 2.8e-84 315.5 180 83.3
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 6.2e-84 314.3 181 82.9
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 6.2e-84 314.3 181 84.0
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 6.2e-84 314.3 179 82.7
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 6.2e-84 314.3 185 82.2
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.4e-83 313.2 181 82.3
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 6.9e-83 310.8 181 82.3
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 8.9e-83 310.5 181 82.3
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.5e-82 309.7 181 82.3
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 2.0e-82 309.3 181 80.7
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 2.6e-82 308.9 181 81.8
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 2.6e-82 308.9 185 78.9
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 2.6e-82 308.9 181 81.8
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 3.4e-82 308.5 181 81.2
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 3.4e-82 308.5 181 80.7
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.4e-82 308.1 181 81.2
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 5.8e-82 307.8 185 79.5
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 9.9e-82 307.0 185 80.0
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 9.9e-82 307.0 179 80.4
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-81 306.6 181 80.7
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.7e-81 306.2 181 79.0
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.2e-81 305.8 181 80.1
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.2e-81 305.8 181 80.1
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.2e-81 305.8 181 80.1
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 3.8e-81 305.1 181 80.7
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 3.8e-81 305.1 181 80.7
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.1e-80 303.5 179 78.8
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 9.3e-80 300.4 181 79.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.2e-79 300.1 181 78.5
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.2e-79 300.1 181 78.5
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 2.7e-79 298.9 181 79.0
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 3.5e-79 298.5 174 81.6
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.5e-79 298.5 174 81.6
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 4.6e-79 298.1 181 77.9
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.0e-78 297.0 179 78.2
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.3e-78 296.6 181 77.3
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.7e-78 296.2 181 75.7
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.7e-78 296.2 181 77.9
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.0e-78 295.4 181 74.0
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.0e-78 295.4 181 77.3
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 3.9e-78 295.0 181 76.2
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.9e-78 295.0 181 76.2
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 3.9e-78 295.0 179 78.2
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.1e-78 294.7 181 76.8
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.6e-78 294.3 179 76.0
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 8.7e-78 293.9 181 77.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 8.7e-78 293.9 179 75.4
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 8.7e-78 293.9 179 77.7
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.1e-77 293.5 179 78.2
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-77 293.5 181 74.6
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-77 293.5 181 74.0
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.1e-77 293.5 179 77.1
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.5e-77 293.1 179 77.7
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.9e-77 292.7 179 76.5
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.5e-77 292.4 179 77.1
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 5.6e-77 291.2 183 73.8
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 1.6e-76 289.7 181 75.1
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.8e-76 288.9 181 74.6
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 4.8e-76 288.1 175 78.3
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 8.1e-76 287.3 179 74.3
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-75 286.6 179 74.3
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-75 286.6 179 73.7
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.4e-75 286.6 179 73.7
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.8e-75 286.2 181 73.5
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 4.0e-75 285.0 175 77.7
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.0e-75 285.0 181 73.5
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.3e-75 284.6 181 73.5
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 5.3e-75 284.6 182 75.8
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.5e-74 283.1 183 76.0
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 3.4e-74 282.0 176 75.6
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 3.4e-74 282.0 176 73.9
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.5e-74 281.6 179 74.9
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 4.5e-74 281.6 174 73.6
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 5.8e-74 281.2 174 74.7
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 5.8e-74 281.2 181 71.8
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 7.6e-74 280.8 181 70.7
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 9.9e-74 280.4 176 72.7
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 185 74.1
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.7e-73 279.6 186 71.0
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 4.9e-73 278.1 180 71.1
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.9e-73 278.1 179 73.7
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.1e-72 276.9 176 74.4
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.1e-72 276.9 185 74.1
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.2e-72 275.0 185 72.4
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 4.2e-72 275.0 186 69.9
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 5.4e-72 274.6 183 73.2
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 5.4e-72 274.6 183 73.2
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 5.4e-72 274.6 183 73.2
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-71 273.5 186 71.5
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 2.1e-71 272.7 174 73.6
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.7e-71 272.3 185 71.4
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.7e-71 272.3 185 71.9
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 2.7e-71 272.3 179 67.6
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 2.7e-71 272.3 180 68.3
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.5e-71 271.9 173 74.0
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.0e-70 270.4 186 70.4
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.3e-70 269.2 185 70.8
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 2.3e-70 269.2 183 70.5
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 2.3e-70 269.2 183 70.5
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 70.3
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 3.0e-70 268.9 177 68.4
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 6.7e-70 267.7 185 70.8
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 8.7e-70 267.3 182 71.4
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 8.7e-70 267.3 177 71.8
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 8.7e-70 267.3 182 72.0
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.5e-69 266.5 186 71.5
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 3.3e-69 265.4 185 68.1
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 3.3e-69 265.4 186 68.8
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 5.6e-69 264.6 176 68.8
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 7.4e-69 264.2 194 69.1
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 8.1e-68 260.8 186 67.7
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-67 260.4 181 68.5
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.1e-67 258.8 177 67.2
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 5.3e-67 258.1 184 72.3
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.2e-66 256.9 179 67.6
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.2e-66 256.9 182 70.3
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 2.6e-66 255.8 181 67.4
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 3.4e-66 255.4 167 73.1
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 9.9e-66 253.8 180 69.4
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 2.4e-64 249.2 180 66.7
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 4.2e-64 248.4 180 66.7
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.8e-60 235.7 178 65.2
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 4.8e-60 235.0 187 59.9
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 7.6e-58 227.6 183 65.0
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.6e-55 219.9 181 59.7
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.8e-54 216.5 171 67.3
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 2.3e-54 216.1 183 62.8
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 2.4e-51 206.1 186 56.5
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.0e-46 189.1 116 75.0
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 5.1e-46 188.3 197 51.3
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 7.4e-45 184.5 118 69.5
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 2.0e-37 159.8 175 41.1
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 2.6e-37 159.5 155 51.0
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 4.8e-28 128.6 137 55.5
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.0e-25 120.9 99 60.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.9e-24 116.7 73 75.3
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 6.7e-22 108.2 164 37.2
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 5.7e-13 78.6 50 74.0
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 1.6e-10 70.5 55 58.2
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 1.6e-10 70.5 55 58.2
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.9e-08 63.5 41 73.2


User provided reference genes

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