Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 2.6e-173 612.8 576 100.0
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 1.0e-161 574.3 576 95.8
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 3.2e-118 429.9 574 83.4
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 4.7e-106 389.4 312 81.7
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 6.8e-105 385.6 312 80.8
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 6.8e-105 385.6 309 82.2
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 2.4e-102 377.1 306 80.7
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 2.4e-102 377.1 306 80.7
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 3.2e-102 376.7 304 81.2
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 4.1e-102 376.3 312 79.8
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 4.1e-102 376.3 312 79.2
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 4.1e-102 376.3 309 80.6
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 7.1e-102 375.6 306 82.4
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 3.5e-101 373.2 308 79.5
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 6.0e-101 372.5 306 79.4
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 6.0e-101 372.5 306 79.4
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.3e-100 371.3 308 78.2
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 2.3e-100 370.5 311 77.5
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 3.9e-100 369.8 295 82.7
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 5.1e-100 369.4 304 81.2
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 8.6e-100 368.6 296 76.0
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 1.1e-99 368.2 309 79.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 1.1e-99 368.2 310 80.3
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 1.5e-99 367.9 309 77.7
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.9e-99 367.5 305 79.3
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 1.9e-99 367.5 312 78.2
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 2.5e-99 367.1 310 80.3
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 3.3e-99 366.7 306 79.4
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 3.3e-99 366.7 309 78.0
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 3.3e-99 366.7 309 78.0
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 2.8e-98 363.6 303 79.5
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 2.8e-98 363.6 310 79.4
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 3.6e-98 363.2 312 77.6
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 4.7e-98 362.8 309 77.3
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 4.7e-98 362.8 307 79.8
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 8.1e-98 362.1 310 79.0
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 8.1e-98 362.1 295 81.0
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 8.1e-98 362.1 303 77.6
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 1.1e-97 361.7 310 79.4
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.4e-97 361.3 305 77.7
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 2.3e-97 360.5 302 79.8
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 3.1e-97 360.1 305 79.3
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 4.0e-97 359.8 295 82.0
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 5.2e-97 359.4 295 82.0
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 8.9e-97 358.6 303 78.9
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 8.9e-97 358.6 305 77.7
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.2e-96 358.2 295 81.7
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 2.0e-96 357.5 306 77.1
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 2.6e-96 357.1 309 77.0
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 2.6e-96 357.1 305 76.7
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.6e-96 357.1 302 77.5
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 5.8e-96 355.9 310 78.1
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 5.8e-96 355.9 299 79.6
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 1.3e-95 354.8 303 78.2
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 1.3e-95 354.8 305 76.7
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 3.7e-95 353.2 306 76.1
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 6.4e-95 352.4 310 75.8
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 8.3e-95 352.1 304 77.0
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 4.1e-94 349.7 311 74.0
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.1e-93 347.4 301 77.4
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 3.5e-93 346.7 299 79.3
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 1.0e-92 345.1 307 73.3
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 8.6e-92 342.0 303 75.9
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.5e-91 340.5 303 59.4
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 4.3e-91 339.7 311 74.3
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 4.3e-91 339.7 302 75.8
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 5.6e-91 339.3 309 75.4
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 7.3e-91 339.0 333 56.8
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 1.2e-90 338.2 301 75.1
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 2.8e-90 337.0 307 73.6
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 3.6e-90 336.7 303 73.9
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 1.1e-89 335.1 298 75.2
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 1.4e-89 334.7 309 72.2
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 1.8e-89 334.3 307 73.0
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 5.2e-89 332.8 306 74.5
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 2.0e-88 330.9 301 74.8
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 7.6e-88 328.9 304 66.1
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 1.3e-87 328.2 325 70.8
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 1.7e-87 327.8 303 72.6
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.9e-87 326.2 309 73.1
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 6.4e-87 325.9 309 72.8
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 8.4e-87 325.5 309 55.0
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 7.1e-86 322.4 310 74.2
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 1.2e-85 321.6 310 74.5
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 1.2e-85 321.6 310 74.5
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.2e-85 321.6 309 72.5
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.2e-85 321.6 309 72.8
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 3.5e-85 320.1 310 74.2
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 3.5e-85 320.1 309 72.5
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 4.8e-82 309.7 293 76.5
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 5.3e-81 306.2 310 71.9
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 1.3e-79 301.6 306 71.2
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 1.4e-73 281.6 306 68.0
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 7.6e-72 275.8 292 69.5
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 2.2e-71 274.2 291 67.0
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.2e-69 268.5 283 71.4
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 2.1e-69 267.7 312 50.6
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 3.0e-60 237.3 211 82.9
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 3.1e-57 227.3 151 72.2
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.6e-53 214.9 136 73.5
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.3e-52 211.8 146 69.2
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 1.1e-51 208.8 196 84.2
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 2.8e-50 204.1 156 64.7
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 2.2e-42 177.9 188 52.7
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 2.5e-38 164.5 103 79.6
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 1.7e-31 141.7 263 48.7
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.8e-31 140.6 98 69.4
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.1e-30 139.0 321 36.1
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 1.6e-29 135.2 261 49.4
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 8.2e-26 122.9 80 76.2
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.0e-23 115.9 267 42.7
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 1.1e-22 112.5 78 71.8
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 7.2e-22 109.8 74 77.0
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 6.8e-20 103.2 110 56.4
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 6.1e-13 80.1 94 54.3
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 1.0e-07 62.8 48 64.6
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.7e-07 62.0 113 30.1
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 8.6e-07 59.7 113 27.4


User provided reference genes

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