Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 4176.3 2203 100.0
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 3768.8 2235 90.8
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2925.6 2250 71.7
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2604.3 2266 65.8
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2600.1 2269 64.8
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2582.4 2277 64.3
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2572.0 2264 64.8
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2570.4 2273 64.4
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2561.2 2270 64.3
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2553.1 2271 64.2
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2535.4 2263 64.6
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2498.0 2271 62.8
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2496.1 2274 62.5
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2495.7 2274 63.6
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2480.7 2270 62.4
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2473.0 2268 62.5
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2455.6 2297 61.5
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2430.6 2321 60.5
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2426.7 2332 60.3
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2409.0 2268 60.9
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2409.0 2342 59.9
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2399.4 2274 61.6
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2381.3 2270 60.8
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2353.9 2280 59.6
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2338.5 2273 59.1
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2335.5 2268 59.0
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2325.8 2264 59.0
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2322.7 2279 59.1
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2311.6 2284 59.8
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2310.0 2274 58.7
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2300.0 2372 57.7
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2291.2 2274 59.3
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2273.8 2273 58.1
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2266.9 2266 58.0
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 2242.2 2278 57.6
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 2197.2 2282 56.8
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 2197.2 2314 56.1
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2186.0 2263 57.7
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2185.2 2083 60.3
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2184.5 2083 60.6
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2152.9 2268 56.6
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2133.6 2242 56.3
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2129.4 2270 56.2
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2125.9 2264 55.9
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2105.1 2345 54.6
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2097.0 2266 55.5
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2084.7 2343 54.0
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 2063.9 2262 54.2
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2054.6 2234 56.3
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 2053.5 2264 54.1
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 2053.1 2262 54.0
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 2048.9 2264 54.2
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2048.5 2313 54.1
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2046.6 2186 55.8
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2043.9 2312 54.1
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 2043.5 2271 54.4
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2041.2 2327 54.6
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2035.8 1766 64.6
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 2029.2 2271 54.1
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 2008.4 2255 53.3
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 2004.2 2262 53.1
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1986.1 2249 53.2
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1982.6 2261 52.8
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1978.8 2258 53.0
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1976.1 2254 53.1
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1973.7 2232 52.9
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1961.0 2260 52.8
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1960.7 2244 53.8
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1960.3 2264 52.2
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1958.7 2259 52.6
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1946.4 2270 51.9
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1945.2 2260 52.4
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1936.0 2296 51.5
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1913.3 2250 52.0
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1912.9 2293 51.8
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1910.6 2242 52.6
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1879.4 1963 55.7
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1854.0 2201 51.6
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1839.3 2208 52.4
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1825.8 2172 51.3
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1812.7 1395 68.5
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1805.0 2223 50.4
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1779.6 2041 52.8
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1778.5 2238 48.8
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1765.0 1396 67.5
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1761.5 1396 67.5
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1744.6 1426 67.0
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1741.1 2258 49.0
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1675.6 2389 45.0
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1497.6 2257 44.1
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1454.5 2313 43.2
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1437.6 1516 57.1
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1417.5 1250 61.0
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1245.7 1652 49.0
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1216.1 1408 53.8
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1189.5 2276 38.5
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 0.0e+00 1127.5 1295 54.9
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 0.0e+00 1112.4 1281 55.3
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 1.3e-308 1064.3 1398 49.7
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 6.3e-300 1035.4 1112 52.5
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 7.4e-293 1011.9 823 67.0
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.0e-269 934.1 1317 45.9
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 7.4e-200 703.0 1763 31.2
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 1.1e-195 689.1 839 56.3
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.7e-178 631.3 1013 43.7
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.1e-174 617.5 490 66.9
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.4e-166 592.4 854 50.6
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.6e-165 588.2 853 50.2
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 2.0e-157 562.0 982 44.6
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 3.6e-154 551.2 1112 40.8
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 5.8e-136 490.7 1701 28.6
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 8.3e-135 486.9 1100 34.8
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 1.2e-133 483.0 1405 29.9
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.9e-131 475.7 430 58.8
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 2.2e-127 462.2 346 70.8
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 8.9e-121 440.3 652 44.0
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 2.5e-115 422.2 913 36.4
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 1.1e-97 363.6 1923 24.4
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 2.0e-88 332.8 284 59.5
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 4.6e-85 321.6 306 61.8
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 5.3e-81 308.1 448 50.0
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 9.0e-81 307.4 219 71.2
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 2.1e-77 296.2 329 50.8
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.5e-75 290.0 379 44.9
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 7.7e-72 277.7 461 46.4
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 2.7e-69 269.2 325 48.0
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.3e-67 262.3 165 82.4
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.0e-57 228.0 154 74.7
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 7.0e-57 228.0 459 41.8
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 2.0e-48 199.9 325 39.1
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.9e-46 193.4 137 69.3
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 2.1e-45 189.9 685 34.3
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 4.4e-43 182.2 230 48.3
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.2e-40 174.1 101 83.2
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 6.5e-39 168.3 191 62.3
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 8.5e-39 167.9 163 59.5
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 7.2e-38 164.9 184 51.1
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.0e-36 159.5 540 29.6
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.7e-35 155.2 222 41.9
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 1.0e-31 144.4 126 58.7
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.4e-27 129.4 380 31.6
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 3.4e-27 129.4 151 55.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-22 114.4 68 77.9
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.2e-18 100.1 397 31.0
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.6e-16 94.0 109 56.9
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 1.1e-14 87.8 195 35.4
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 1.9e-14 87.0 113 47.8
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 5.6e-14 85.5 116 44.0
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 9.5e-14 84.7 73 65.8
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.2e-13 84.3 133 33.8
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.1e-12 79.7 320 31.2
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 8.9e-12 78.2 63 66.7
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 3.4e-11 76.3 92 50.0
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 2.2e-10 73.6 96 46.9
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 7.1e-09 68.6 73 54.8
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 1.7e-07 63.9 45 73.3
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.5e-06 60.8 61 50.8
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 7.3e-06 58.5 59 55.9
SEGI_20776 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 7.3e-06 58.5 40 62.5


User provided reference genes

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