Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0104600 Salix brachista HOM05D006586 ORTHO05D008254 1.0e-198 696.4 327 100.0
Potri.015G080400 Populus trichocarpa HOM05D006586 ORTHO05D008254 2.3e-118 429.5 324 65.1
Manes.14G062950 Manihot esculenta HOM05D006586 ORTHO05D008254 5.6e-96 355.1 325 55.7
QL10p008791 Quercus lobata HOM05D006586 ORTHO05D008254 1.4e-94 350.5 325 54.2
Haze_07550 Corylus avellana HOM05D006586 ORTHO05D008254 1.8e-94 350.1 327 53.5
Cfa019173 Carpinus fangiana HOM05D006586 ORTHO05D008254 8.9e-94 347.8 327 53.2
Thecc.03G024500 Theobroma cacao HOM05D006586 ORTHO05D008254 2.9e-92 342.8 325 52.9
CiPaw.11G023000 Carya illinoinensis HOM05D006586 ORTHO05D008254 4.9e-92 342.0 327 52.3
FvH4_5g05750 Fragaria vesca HOM05D006586 ORTHO05D008254 7.1e-91 338.2 327 51.7
Ciclev10019926m.g Citrus clementina HOM05D006586 ORTHO05D008254 2.7e-90 336.3 326 50.9
COL.COLO4_30118 Corchorus olitorius HOM05D006586 ORTHO05D008254 1.0e-89 334.3 325 51.7
Atru.chr9.2534_Atru.chr9.2535 Acer truncatum HOM05D006586 ORTHO05D008254 6.6e-89 331.6 325 51.1
Nitab4.5_0001284g0040 Nicotiana tabacum HOM05D006586 ORTHO05D008254 2.5e-88 329.7 325 49.8
Nitab4.5_0006452g0010 Nicotiana tabacum HOM05D006586 ORTHO05D008254 2.5e-88 329.7 325 50.5
Peaxi162Scf00089g01633 Petunia axillaris HOM05D006586 ORTHO05D008254 3.3e-88 329.3 325 50.8
CSS0037952 Camellia sinensis var. sinensis HOM05D006586 ORTHO05D008254 1.6e-87 327.0 325 51.4
PGSC0003DMG400018168 Solanum tuberosum HOM05D006586 ORTHO05D008254 1.6e-87 327.0 325 50.2
RcHm_v2.0_Chr7g0193061 Rosa chinensis HOM05D006586 ORTHO05D008254 2.1e-87 326.6 325 49.8
GSVIVG01007692001 Vitis vinifera HOM05D006586 ORTHO05D008254 2.1e-87 326.6 325 50.8
Duzib205G0761 Durio zibethinus HOM05D006586 ORTHO05D008254 2.8e-87 326.2 325 49.8
Prupe.5G169900 Prunus persica HOM05D006586 ORTHO05D008254 4.8e-87 325.5 327 49.8
MD14G1175900 Malus domestica HOM05D006586 ORTHO05D008254 1.4e-86 323.9 325 49.2
PGR083G0458 Punica granatum HOM05D006586 ORTHO05D008254 1.8e-86 323.6 325 50.8
Nn4g22672 Nelumbo nucifera HOM05D006586 ORTHO05D008254 2.4e-86 323.2 326 49.7
Sopen03g031690 Solanum pennellii HOM05D006586 ORTHO05D008254 4.0e-86 322.4 325 49.2
Aqoxy3G02831 Aquilegia oxysepala HOM05D006586 ORTHO05D008254 5.3e-86 322.0 325 49.5
Sabra15G0072500 Salix brachista HOM05D006586 ORTHO05D008254 9.0e-86 321.2 176 89.2
Oeu036011.1 Olea europaea HOM05D006586 ORTHO05D008254 2.6e-85 319.7 325 48.9
Solyc03g112600.4 Solanum lycopersicum HOM05D006586 ORTHO05D008254 3.4e-85 319.3 325 48.9
MSTRG.23151 Avicennia marina HOM05D006586 ORTHO05D008254 7.6e-85 318.2 325 48.9
Sc10g0010150 Simmondsia chinensis HOM05D006586 ORTHO05D008254 9.9e-85 317.8 323 49.5
Lj9C445T6 Lonicera japonica HOM05D006586 ORTHO05D008254 1.7e-84 317.0 326 49.7
Actinidia19342 Actinidia chinensis HOM05D006586 ORTHO05D008254 2.9e-84 316.2 328 49.7
CsaV3_1G001320 Cucumis sativus L. HOM05D006586 ORTHO05D008254 3.2e-83 312.8 327 50.2
ClCG06G017160 Citrullus lanatus HOM05D006586 ORTHO05D008254 4.2e-83 312.4 327 49.8
Lsat_1_v5_gn_4_75921 Lactuca sativa HOM05D006586 ORTHO05D008254 1.2e-82 310.8 325 47.4
SGA_v2.0_scaffold25G10812 Striga asiatica HOM05D006586 ORTHO05D008254 1.2e-82 310.8 325 48.6
Migut.O00130 Erythranthe guttata HOM05D006586 ORTHO05D008254 1.6e-82 310.5 325 47.7
CAN.G1166.29 Capsicum annuum HOM05D006586 ORTHO05D008254 2.7e-82 309.7 325 48.0
Hund09455 Selenicereus undatus HOM05D006586 ORTHO05D008254 3.5e-82 309.3 333 47.7
TAR371G0860 Trochodendron aralioides HOM05D006586 ORTHO05D008254 3.0e-81 306.2 325 47.7
Gohir.A12G272800 Gossypium hirsutum HOM05D006586 ORTHO05D008254 3.9e-81 305.8 325 48.3
THA.LOC104821484 Tarenaya hassleriana HOM05D006586 ORTHO05D008254 6.6e-81 305.1 325 47.4
Cc04_g12530 Coffea canephora HOM05D006586 ORTHO05D008254 1.9e-80 303.5 325 46.2
PSO832G2003 Papaver somniferum HOM05D006586 ORTHO05D008254 2.5e-80 303.1 327 47.4
Gohir.D12G273500 Gossypium hirsutum HOM05D006586 ORTHO05D008254 3.3e-80 302.8 325 48.3
Eucgr.B00243 Eucalyptus grandis HOM05D006586 ORTHO05D008254 5.6e-80 302.0 325 48.0
Rhsim08G0174900 Rhododendron simsii HOM05D006586 ORTHO05D008254 7.3e-80 301.6 325 47.7
SalBow5G1744 Salvia bowleyana HOM05D006586 ORTHO05D008254 7.3e-80 301.6 326 48.2
BcaB04g19943 Brassica carinata HOM05D006586 ORTHO05D008254 1.6e-79 300.4 326 46.3
Gorai.008G293900 Gossypium raimondii HOM05D006586 ORTHO05D008254 1.6e-79 300.4 327 48.0
Thhalv10004134m.g Eutrema salsugineum HOM05D006586 ORTHO05D008254 4.8e-79 298.9 325 46.5
Lj1g0001085 Lotus japonicus HOM05D006586 ORTHO05D008254 6.2e-79 298.5 330 47.6
BcaC04g23364 Brassica carinata HOM05D006586 ORTHO05D008254 8.1e-79 298.1 326 46.0
C09p09140 Brassica napus HOM05D006586 ORTHO05D008254 1.4e-78 297.4 325 46.2
BolC9t53826H Brassica oleracea HOM05D006586 ORTHO05D008254 1.4e-78 297.4 325 46.2
SHI17138 Sapria himalayana HOM05D006586 ORTHO05D008254 1.8e-78 297.0 329 46.8
SalBow5G1232 Salvia bowleyana HOM05D006586 ORTHO05D008254 3.1e-78 296.2 326 47.5
A09p08080 Brassica napus HOM05D006586 ORTHO05D008254 4.0e-78 295.8 324 45.4
BraA09t36459Z Brassica rapa HOM05D006586 ORTHO05D008254 4.0e-78 295.8 324 45.4
PSO063G4773 Papaver somniferum HOM05D006586 ORTHO05D008254 5.3e-78 295.4 327 46.5
FAN18G2086 Fragaria x ananassa HOM05D006586 ORTHO05D008254 6.9e-78 295.0 324 47.2
HanXRQChr11g0348321 Helianthus annuus HOM05D006586 ORTHO05D008254 9.0e-78 294.7 325 46.5
Sp2g26210 Schrenkiella parvula HOM05D006586 ORTHO05D008254 9.0e-78 294.7 325 46.5
Phvul.009G175900 Phaseolus vulgaris HOM05D006586 ORTHO05D008254 3.4e-77 292.7 331 47.7
Ah.02g110650 Amaranthus hybridus HOM05D006586 ORTHO05D008254 4.5e-77 292.4 328 46.6
AT5G63080 Arabidopsis thaliana HOM05D006586 ORTHO05D008254 4.5e-77 292.4 325 45.5
Psat5g115280 Pisum sativum HOM05D006586 ORTHO05D008254 5.8e-77 292.0 330 47.0
AUR62028758 Chenopodium quinoa HOM05D006586 ORTHO05D008254 1.7e-76 290.4 327 47.7
Glyma.04G185900 Glycine max HOM05D006586 ORTHO05D008254 1.7e-76 290.4 329 48.0
Lalb_Chr11g0070371 Lupinus albus HOM05D006586 ORTHO05D008254 6.4e-76 288.5 329 46.8
Medtr3g077420 Medicago truncatula HOM05D006586 ORTHO05D008254 1.4e-75 287.3 328 47.3
ATR1152G085 Amborella trichopoda HOM05D006586 ORTHO05D008254 1.9e-75 287.0 328 43.6
AL8G40110 Arabidopsis lyrata HOM05D006586 ORTHO05D008254 5.4e-75 285.4 325 44.0
arahy.Tifrunner.gnm1.ann1.BDIM58 Arachis hypogaea HOM05D006586 ORTHO05D008254 1.2e-74 284.3 321 47.0
EL10Ac5g10701 Beta vulgaris HOM05D006586 ORTHO05D008254 4.6e-74 282.3 324 45.4
arahy.Tifrunner.gnm1.ann1.Y9SFAP Arachis hypogaea HOM05D006586 ORTHO05D008254 7.9e-74 281.6 321 47.0
DCAR_016036 Daucus carota HOM05D006586 ORTHO05D008254 1.1e-72 277.7 327 44.6
Carub.0008s2381 Capsella rubella HOM05D006586 ORTHO05D008254 4.3e-72 275.8 356 42.7
TPR.G28722 Trifolium pratense HOM05D006586 ORTHO05D008254 1.1e-70 271.2 330 43.9
Sed0000603 Sechium edule HOM05D006586 ORTHO05D008254 5.3e-70 268.9 302 47.0
AUR62008177 Chenopodium quinoa HOM05D006586 ORTHO05D008254 1.0e-68 264.6 327 45.0
Zm00001eb342240 Zea mays HOM05D006586 ORTHO05D008254 2.9e-68 263.1 326 41.4
FAN04G1931 Fragaria x ananassa HOM05D006586 ORTHO05D008254 3.0e-65 253.1 285 46.3
SEGI_41391 Sequoiadendron giganteum HOM05D006586 ORTHO05D008254 1.9e-64 250.4 324 40.1
CDE04G2890 Ceratophyllum demersum HOM05D006586 ORTHO05D008254 1.8e-62 243.8 304 44.1
FAN13G1600 Fragaria x ananassa HOM05D006586 ORTHO05D008254 4.5e-61 239.2 287 45.6
vmacro19416 Vaccinium macrocarpon HOM05D006586 ORTHO05D008254 2.9e-60 236.5 419 36.3
MELO3C026280.2 Cucumis melo HOM05D006586 ORTHO05D008254 2.5e-59 233.4 285 44.9
VMungo1309G1735 Vigna mungo HOM05D006586 ORTHO05D008254 4.2e-59 232.6 301 44.2
SMO141G0010 Selaginella moellendorffii HOM05D006586 ORTHO05D008254 3.5e-58 229.6 323 37.8
Mapoly0108s0029 Marchantia polymorpha HOM05D006586 ORTHO05D008254 2.3e-57 226.9 325 37.5
unitig_22.g6289 Utricularia gibba HOM05D006586 ORTHO05D008254 7.4e-56 221.9 325 38.2
AagrBONN_evm.TU.Sc2ySwM_344.3069 Anthoceros agrestis HOM05D006586 ORTHO05D008254 1.2e-53 214.5 323 36.5
Dinv20623 Davidia involucrata HOM05D006586 ORTHO05D008254 6.5e-52 208.8 128 75.0
Aa31LG11G590 Aethionema arabicum HOM05D006586 ORTHO05D008254 3.7e-47 193.0 286 38.1
arahy.Tifrunner.gnm1.ann1.1D5X8L Arachis hypogaea HOM05D006586 ORTHO05D008254 1.5e-45 187.6 96 83.3
MBI16_g14603_MAGBIO Magnolia biondii HOM05D006586 ORTHO05D008254 3.8e-44 183.0 137 59.1
MBI16_g23863_MAGBIO Magnolia biondii HOM05D006586 ORTHO05D008254 3.8e-44 183.0 137 59.1
Aqoxy1G03747 Aquilegia oxysepala HOM05D006586 ORTHO05D008254 3.2e-43 179.9 245 40.4
CANSAT64G0258 Cannabis sativa HOM05D006586 ORTHO05D008254 4.2e-43 179.5 138 62.3
CBR_g49886 Chara braunii HOM05D006586 ORTHO05D008254 1.2e-42 177.9 402 29.9
Os01g0546900 Oryza sativa ssp. japonica HOM05D006586 ORTHO05D008254 3.0e-41 173.3 247 38.9
ECA232G2495 Erigeron canadensis HOM05D006586 ORTHO05D000001 5.1e-41 172.6 249 39.0
Ca_16153_v3 Cicer arietinum L. HOM05D006586 ORTHO05D008254 1.8e-38 164.1 258 38.8
arahy.Tifrunner.gnm1.ann1.DN8DE7 Arachis hypogaea HOM05D006586 ORTHO05D008254 3.0e-33 146.7 134 55.2
HPP92_023397 Vanilla planifolia HOM05D006586 ORTHO05D008254 2.5e-27 127.1 85 62.4
MCO16G527 Micromonas commoda HOM05D006586 ORTHO05D008254 8.0e-26 122.1 320 26.2
Cpa.g.sc153.15 Carica papaya HOM05D006586 ORTHO05D008254 1.8e-25 120.9 71 74.6
Dinv20624 Davidia involucrata HOM05D006586 ORTHO05D008254 4.7e-18 96.3 45 84.4
PRCOL_00001780 Prasinoderma coloniale HOM05D006586 ORTHO05D008254 2.3e-17 94.0 85 50.6
FAN08G2490 Fragaria x ananassa HOM05D006586 ORTHO05D008254 1.5e-16 91.3 41 87.8
Cre03.g177007 Chlamydomonas reinhardtii HOM05D006586 ORTHO05D008254 2.0e-16 90.9 53 64.2
Thecc.03G019600 Theobroma cacao HOM05D006586 ORTHO05D008254 2.0e-13 80.9 44 81.8
Cpa.g.sc153.14 Carica papaya HOM05D006586 ORTHO05D008254 8.6e-12 75.5 66 57.6
Glyma.06G180100 Glycine max HOM05D006586 ORTHO05D008254 1.6e-10 71.2 49 67.3


User provided reference genes

Program Settings