Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0074100 Salix brachista HOM05D002360 ORTHO05D006297 5.1e-122 441.0 215 100.0
Sabra15G0049500 Salix brachista HOM05D002360 ORTHO05D006297 2.5e-100 369.0 184 98.4
Potri.005G050700 Populus trichocarpa HOM05D002360 ORTHO05D006297 3.5e-78 295.4 146 97.3
Rhsim07G0175400 Rhododendron simsii HOM05D002360 ORTHO05D006297 4.0e-74 282.0 165 81.2
Sabra13G0035800 Salix brachista HOM05D002360 ORTHO05D006297 1.2e-73 280.4 145 93.1
CiPaw.07G006100 Carya illinoinensis HOM05D002360 ORTHO05D006297 1.5e-73 280.0 151 88.1
Potri.013G037700 Populus trichocarpa HOM05D002360 ORTHO05D006297 1.5e-73 280.0 145 93.1
Aqoxy2G03380 Aquilegia oxysepala HOM05D002360 ORTHO05D006297 2.6e-73 279.3 163 81.6
Cfa006458 Carpinus fangiana HOM05D002360 ORTHO05D006297 3.4e-73 278.9 145 91.0
Gohir.D11G264800 Gossypium hirsutum HOM05D002360 ORTHO05D006297 4.4e-73 278.5 145 90.3
Gorai.007G284900 Gossypium raimondii HOM05D002360 ORTHO05D006297 4.4e-73 278.5 145 90.3
GSVIVG01021843001 Vitis vinifera HOM05D002360 ORTHO05D006297 5.7e-73 278.1 145 91.0
CSS0031670 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006297 7.5e-73 277.7 146 89.0
QL03p024594 Quercus lobata HOM05D002360 ORTHO05D006297 9.8e-73 277.3 151 87.4
QL03p024729 Quercus lobata HOM05D002360 ORTHO05D006297 9.8e-73 277.3 151 87.4
Atru.chr2.771 Acer truncatum HOM05D002360 ORTHO05D006297 1.3e-72 276.9 157 83.4
Haze_04332 Corylus avellana HOM05D002360 ORTHO05D006297 1.3e-72 276.9 145 90.3
Nn1g02298 Nelumbo nucifera HOM05D002360 ORTHO05D006297 1.3e-72 276.9 145 89.7
MBI01_g13082_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006297 1.7e-72 276.6 145 91.0
Manes.08G128100 Manihot esculenta HOM05D002360 ORTHO05D006297 1.7e-72 276.6 145 89.0
Aqoxy3G02075 Aquilegia oxysepala HOM05D002360 ORTHO05D006297 3.7e-72 275.4 163 81.0
AUR62000984 Chenopodium quinoa HOM05D002360 ORTHO05D006297 3.7e-72 275.4 146 89.0
Prupe.6G340000 Prunus persica HOM05D002360 ORTHO05D006297 3.7e-72 275.4 145 89.7
THA.LOC104821685 Tarenaya hassleriana HOM05D002360 ORTHO05D006297 3.7e-72 275.4 146 88.4
Actinidia05764 Actinidia chinensis HOM05D002360 ORTHO05D006297 4.8e-72 275.0 157 82.8
Gohir.A13G170700 Gossypium hirsutum HOM05D002360 ORTHO05D006297 8.3e-72 274.2 160 81.2
Gohir.D13G176200 Gossypium hirsutum HOM05D002360 ORTHO05D006297 8.3e-72 274.2 160 81.2
Gorai.013G201600 Gossypium raimondii HOM05D002360 ORTHO05D006297 8.3e-72 274.2 160 81.2
VMungo0720G1538 Vigna mungo HOM05D002360 ORTHO05D006297 8.3e-72 274.2 145 88.3
arahy.Tifrunner.gnm1.ann1.X7Z7AQ Arachis hypogaea HOM05D002360 ORTHO05D006297 1.1e-71 273.9 166 78.9
CANSAT54G2096 Cannabis sativa HOM05D002360 ORTHO05D006297 1.1e-71 273.9 157 82.8
Duzib177G0875 Durio zibethinus HOM05D002360 ORTHO05D006297 1.1e-71 273.9 145 89.0
Atru.chr2.765 Acer truncatum HOM05D002360 ORTHO05D006297 1.4e-71 273.5 145 89.0
Cc02_g31750 Coffea canephora HOM05D002360 ORTHO05D006297 1.4e-71 273.5 145 88.3
Migut.O00560 Erythranthe guttata HOM05D002360 ORTHO05D006297 1.4e-71 273.5 151 84.8
FvH4_6g03420 Fragaria vesca HOM05D002360 ORTHO05D006297 1.4e-71 273.5 151 85.4
FAN02G3593 Fragaria x ananassa HOM05D002360 ORTHO05D006297 1.4e-71 273.5 151 85.4
FAN14G1113 Fragaria x ananassa HOM05D002360 ORTHO05D006297 1.4e-71 273.5 151 85.4
TAR362G0813 Trochodendron aralioides HOM05D002360 ORTHO05D006297 1.4e-71 273.5 151 85.4
FAN09G3371 Fragaria x ananassa HOM05D002360 ORTHO05D006297 1.8e-71 273.1 151 85.4
Gohir.A11G255100 Gossypium hirsutum HOM05D002360 ORTHO05D006297 1.8e-71 273.1 145 89.0
RcHm_v2.0_Chr3g0451921 Rosa chinensis HOM05D002360 ORTHO05D006297 1.8e-71 273.1 151 85.4
FAN05G4730 Fragaria x ananassa HOM05D002360 ORTHO05D006297 2.4e-71 272.7 151 84.8
Oeu021637.1 Olea europaea HOM05D002360 ORTHO05D006297 2.4e-71 272.7 149 86.6
Oeu021639.1 Olea europaea HOM05D002360 ORTHO05D006297 2.4e-71 272.7 149 86.6
Atru.chr2.757 Acer truncatum HOM05D002360 ORTHO05D006297 3.1e-71 272.3 157 82.2
arahy.Tifrunner.gnm1.ann1.093KP0 Arachis hypogaea HOM05D002360 ORTHO05D006297 3.1e-71 272.3 166 78.3
Eucgr.H04384 Eucalyptus grandis HOM05D002360 ORTHO05D006297 3.1e-71 272.3 157 80.3
Eucgr.L02103 Eucalyptus grandis HOM05D002360 ORTHO05D006297 3.1e-71 272.3 157 80.3
Phvul.007G186000 Phaseolus vulgaris HOM05D002360 ORTHO05D006297 3.1e-71 272.3 145 88.3
TPR.G11141 Trifolium pratense HOM05D002360 ORTHO05D006297 3.1e-71 272.3 145 88.3
Cpa.g.sc117.67 Carica papaya HOM05D002360 ORTHO05D006297 5.4e-71 271.6 145 88.3
Glyma.10G160500 Glycine max HOM05D002360 ORTHO05D006297 5.4e-71 271.6 145 88.3
Glyma.20G227900 Glycine max HOM05D002360 ORTHO05D006297 5.4e-71 271.6 145 87.6
TWI56G0866 Tripterygium wilfordii HOM05D002360 ORTHO05D006297 5.4e-71 271.6 157 81.5
MSTRG.5092 Avicennia marina HOM05D002360 ORTHO05D006297 7.0e-71 271.2 151 84.8
Thecc.05G288400 Theobroma cacao HOM05D002360 ORTHO05D006297 7.0e-71 271.2 145 87.6
CDE02G0904 Ceratophyllum demersum HOM05D002360 ORTHO05D006297 9.1e-71 270.8 151 83.4
Medtr1g081290 Medicago truncatula HOM05D002360 ORTHO05D006297 9.1e-71 270.8 157 80.3
Psat6g147000 Pisum sativum HOM05D002360 ORTHO05D006297 9.1e-71 270.8 145 87.6
Lalb_Chr21g0310911 Lupinus albus HOM05D002360 ORTHO05D006297 1.2e-70 270.4 145 86.2
Lalb_Chr06g0167981 Lupinus albus HOM05D002360 ORTHO05D006297 1.6e-70 270.0 145 88.3
Peaxi162Scf00404g00021 Petunia axillaris HOM05D002360 ORTHO05D006297 2.0e-70 269.6 157 80.9
AL3G15160 Arabidopsis lyrata HOM05D002360 ORTHO05D006297 3.5e-70 268.9 146 85.6
AT3G04870 Arabidopsis thaliana HOM05D002360 ORTHO05D006297 3.5e-70 268.9 146 85.6
FAN05G4267 Fragaria x ananassa HOM05D002360 ORTHO05D006297 3.5e-70 268.9 151 84.1
SalBow3G4548 Salvia bowleyana HOM05D002360 ORTHO05D006297 3.5e-70 268.9 157 80.9
vmacro05071 Vaccinium macrocarpon HOM05D002360 ORTHO05D006297 3.5e-70 268.9 146 86.3
Aa31LG5G15260 Aethionema arabicum HOM05D002360 ORTHO05D006297 4.5e-70 268.5 146 85.6
Ca_10056_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006297 4.5e-70 268.5 145 85.5
Ca_30666_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006297 4.5e-70 268.5 145 85.5
Lj9A666T47 Lonicera japonica HOM05D002360 ORTHO05D006297 4.5e-70 268.5 145 85.5
Lj9A669T11 Lonicera japonica HOM05D002360 ORTHO05D006297 4.5e-70 268.5 145 85.5
Lj5g0023870 Lotus japonicus HOM05D002360 ORTHO05D006297 4.5e-70 268.5 145 86.9
Lalb_Chr02g0148681 Lupinus albus HOM05D002360 ORTHO05D006297 4.5e-70 268.5 145 87.6
PGR083G0408 Punica granatum HOM05D002360 ORTHO05D006297 4.5e-70 268.5 145 86.2
Carub.0003s0406 Capsella rubella HOM05D002360 ORTHO05D006297 5.9e-70 268.1 146 84.9
PSO210G5722 Papaver somniferum HOM05D002360 ORTHO05D006297 5.9e-70 268.1 163 76.7
PSO761G0170 Papaver somniferum HOM05D002360 ORTHO05D006297 5.9e-70 268.1 163 76.7
Sp3g03690 Schrenkiella parvula HOM05D002360 ORTHO05D006297 5.9e-70 268.1 146 84.9
Thhalv10020402m.g Eutrema salsugineum HOM05D002360 ORTHO05D006297 7.7e-70 267.7 146 84.9
Os07g0204900 Oryza sativa ssp. japonica HOM05D002360 ORTHO05D006297 7.7e-70 267.7 145 85.5
Nitab4.5_0002361g0070 Nicotiana tabacum HOM05D002360 ORTHO05D006297 1.7e-69 266.5 145 85.5
Nitab4.5_0013433g0020 Nicotiana tabacum HOM05D002360 ORTHO05D006297 1.7e-69 266.5 157 79.0
CDE10G0593 Ceratophyllum demersum HOM05D002360 ORTHO05D006297 2.2e-69 266.2 145 87.6
Hund22113 Selenicereus undatus HOM05D002360 ORTHO05D006297 2.2e-69 266.2 151 83.4
CAN.G134.165 Capsicum annuum HOM05D002360 ORTHO05D006297 2.9e-69 265.8 157 79.6
MD04G1220900 Malus domestica HOM05D002360 ORTHO05D006297 2.9e-69 265.8 145 86.2
CARHR079140 Cardamine hirsuta HOM05D002360 ORTHO05D006297 3.8e-69 265.4 146 82.9
MD12G1237300 Malus domestica HOM05D002360 ORTHO05D006297 5.0e-69 265.0 145 86.2
Solyc01g097810.3 Solanum lycopersicum HOM05D002360 ORTHO05D006297 5.0e-69 265.0 145 84.8
Sopen01g041410 Solanum pennellii HOM05D002360 ORTHO05D006297 5.0e-69 265.0 145 84.8
MSTRG.20432 Avicennia marina HOM05D002360 ORTHO05D006297 6.5e-69 264.6 144 84.0
DCAR_025321 Daucus carota HOM05D002360 ORTHO05D006297 6.5e-69 264.6 157 78.3
ECA238G1720 Erigeron canadensis HOM05D002360 ORTHO05D006297 8.5e-69 264.2 157 78.3
PGSC0003DMG400022473 Solanum tuberosum HOM05D002360 ORTHO05D006297 8.5e-69 264.2 145 84.8
unitig_899.g15576 Utricularia gibba HOM05D002360 ORTHO05D006297 8.5e-69 264.2 144 86.1
Zm00001eb302940 Zea mays HOM05D002360 ORTHO05D006297 8.5e-69 264.2 145 83.4
Sc06g0003660 Simmondsia chinensis HOM05D002360 ORTHO05D006297 1.1e-68 263.8 145 84.8
A05p42730 Brassica napus HOM05D002360 ORTHO05D006297 1.5e-68 263.5 146 82.9
C05p62450 Brassica napus HOM05D002360 ORTHO05D006297 1.5e-68 263.5 146 82.9
BolC5t34898H Brassica oleracea HOM05D002360 ORTHO05D006297 1.5e-68 263.5 146 82.9
BraA05t22980Z Brassica rapa HOM05D002360 ORTHO05D006297 1.5e-68 263.5 146 82.9
Lsat_1_v5_gn_2_66260 Lactuca sativa HOM05D002360 ORTHO05D006297 1.5e-68 263.5 163 76.1
DCAR_006616 Daucus carota HOM05D002360 ORTHO05D006297 1.9e-68 263.1 157 77.7
CsaV3_1G045650 Cucumis sativus L. HOM05D002360 ORTHO05D006297 2.5e-68 262.7 145 83.4
Migut.B01073 Erythranthe guttata HOM05D002360 ORTHO05D006297 2.5e-68 262.7 144 85.4
HanXRQChr14g0445461 Helianthus annuus HOM05D002360 ORTHO05D006297 3.2e-68 262.3 157 79.0
Sed0001820 Sechium edule HOM05D002360 ORTHO05D006297 3.2e-68 262.3 145 84.1
ATR0737G142 Amborella trichopoda HOM05D002360 ORTHO05D006297 4.2e-68 261.9 144 86.8
Dinv11540 Davidia involucrata HOM05D002360 ORTHO05D006297 5.5e-68 261.5 144 86.1
HPP92_015926 Vanilla planifolia HOM05D002360 ORTHO05D006297 7.2e-68 261.2 146 82.2
MELO3C024674.2 Cucumis melo HOM05D002360 ORTHO05D006297 1.2e-67 260.4 145 82.8
SGA_v2.0_scaffold43G16299 Striga asiatica HOM05D002360 ORTHO05D006297 3.6e-67 258.8 170 73.5
Pp3c17_7790 Physcomitrium patens HOM05D002360 ORTHO05D006297 6.8e-66 254.6 146 78.8
Dinv17764 Davidia involucrata HOM05D002360 ORTHO05D006297 4.4e-65 251.9 193 66.8
EL10Ac4g09172 Beta vulgaris HOM05D002360 ORTHO05D006297 1.7e-64 250.0 125 94.4
SEGI_13435 Sequoiadendron giganteum HOM05D002360 ORTHO05D006297 9.2e-63 244.2 145 77.9
Pp3c15_1320 Physcomitrium patens HOM05D002360 ORTHO05D006297 7.7e-62 241.1 157 68.8
Pp3c26_1430 Physcomitrium patens HOM05D002360 ORTHO05D006297 5.0e-61 238.4 157 68.8
Mapoly0032s0099 Marchantia polymorpha HOM05D002360 ORTHO05D006297 1.5e-60 236.9 145 73.8
CBR_g37129 Chara braunii HOM05D002360 ORTHO05D006297 9.5e-60 234.2 144 72.9
TAR633G2632 Trochodendron aralioides HOM05D002360 ORTHO05D006297 1.2e-57 227.3 116 94.8
Migut.O00487 Erythranthe guttata HOM05D002360 ORTHO05D006297 2.6e-57 226.1 163 65.0
AUR62004975 Chenopodium quinoa HOM05D002360 ORTHO05D006297 9.8e-57 224.2 116 92.2
SMO115G0128 Selaginella moellendorffii HOM05D002360 ORTHO05D006297 3.7e-56 222.2 144 71.5
ClCG06G009140 Citrullus lanatus HOM05D002360 ORTHO05D006297 3.2e-55 219.2 250 48.8
Duzib106G0756 Durio zibethinus HOM05D002360 ORTHO05D006297 3.4e-49 199.1 110 82.7
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 1.9e-47 193.4 143 61.5
CAN.G134.163 Capsicum annuum HOM05D002360 ORTHO05D006297 3.9e-29 132.5 74 85.1
SEGI_34217 Sequoiadendron giganteum HOM05D002360 ORTHO05D006297 2.0e-17 93.6 70 67.1
Manes.09G155801 Manihot esculenta HOM05D002360 ORTHO05D006297 8.4e-16 88.2 66 65.2
SGA_v2.0_scaffold196G40973 Striga asiatica HOM05D002360 ORTHO05D006297 2.7e-14 83.2 163 33.1
Prupe.3G264800 Prunus persica HOM05D002360 ORTHO05D000394 1.8e-10 70.5 38 86.8
MBI15_g37229_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 9.9e-09 64.7 34 91.2
Sabra15G0074600 Salix brachista HOM05D000141 ORTHO05D001860 6.4e-08 62.0 29 96.6
SalBow6G3918 Salvia bowleyana HOM05D002360 ORTHO05D006971 1.9e-07 60.5 142 26.8
Cc04_g00540 Coffea canephora HOM05D002360 ORTHO05D006971 2.4e-07 60.1 140 27.9
Nitab4.5_0006338g0050 Nicotiana tabacum HOM05D002360 ORTHO05D006971 4.2e-07 59.3 142 27.5
CAN.G790.47 Capsicum annuum HOM05D002360 ORTHO05D006971 9.3e-07 58.2 142 27.5
Peaxi162Scf00038g02444 Petunia axillaris HOM05D002360 ORTHO05D006971 9.3e-07 58.2 140 26.4
PGSC0003DMG400009156 Solanum tuberosum HOM05D002360 ORTHO05D006971 9.3e-07 58.2 142 27.5
Solyc03g123760.3 Solanum lycopersicum HOM05D002360 ORTHO05D006971 1.2e-06 57.8 144 27.8
Sopen03g041530 Solanum pennellii HOM05D002360 ORTHO05D006971 1.2e-06 57.8 144 27.8
HPP92_016649 Vanilla planifolia HOM05D002360 ORTHO05D006971 2.7e-06 56.6 140 27.1
COL.COLO4_35973 Corchorus olitorius HOM05D002360 ORTHO05D006971 3.5e-06 56.2 144 26.4
HanXRQChr15g0497361 Helianthus annuus HOM05D002360 ORTHO05D006971 3.5e-06 56.2 142 28.2
Lsat_1_v5_gn_4_89381 Lactuca sativa HOM05D002360 ORTHO05D006971 4.6e-06 55.8 142 27.5
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 6.0e-06 55.5 142 26.8
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 6.0e-06 55.5 142 26.8
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 6.0e-06 55.5 142 25.4
CBR_g29276 Chara braunii HOM05D002360 ORTHO05D000002 7.9e-06 55.1 99 28.3
Hma1.2p1_1104F.1_g257550 Hydrangea macrophylla HOM05D002360 ORTHO05D006971 7.9e-06 55.1 142 26.8
Pp3c21_12310 Physcomitrium patens HOM05D002360 ORTHO05D006971 7.9e-06 55.1 132 28.0
TAR371G0365 Trochodendron aralioides HOM05D002360 ORTHO05D006971 7.9e-06 55.1 142 27.5


User provided reference genes

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