Gene: AT3G04870

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G04870
  • Transcript Identifier AT3G04870.1
  • Gene Type Coding gene
  • Location Chr3 : 1342842-1346189 : positive

Gene Family Information

  • ID HOM05D002360
  • #Genes/#Species 288/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G04870.1
  • symbol ZDS
  • Alias PDE181,PIGMENT DEFECTIVE EMBRYO 181,SPC1,SPONTANEOUS CELL DEATH 1
  • uniprot Q38893

Descriptions

  • Description zeta-carotene desaturase
  • Computational description zeta-carotene desaturase (ZDS); FUNCTIONS IN: carotene 7,8-desaturase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), Carotene 7,8-desaturase (InterPro:IPR014103); BEST Arabidopsis thaliana protein match is: phytoene desaturase 3 (TAIR:AT4G14210.1); Has 3641 Blast hits to 3625 proteins in 890 species: Archae - 42; Bacteria - 1934; Metazoa - 256; Fungi - 59; Plants - 443; Viruses - 2; Other Eukaryotes - 905 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016117
IEA
GOA Databasecarotenoid biosynthetic process
GO:0016117
IMP
Gene Ontologycarotenoid biosynthetic process1
GO:0016117
IEA
InterProcarotenoid biosynthetic process
GO:0016120
IDA
IBA
Gene Ontologycarotene biosynthetic process2 3
GO:1901177
IDA
Gene Ontologylycopene biosynthetic process2
GO:0052889
IDA
Gene Ontology9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IBA
Gene Ontologyoxidoreductase activity3
GO:0016491
IEA
InterProoxidoreductase activity
GO:0016719
IEA
GOA Databasecarotene 7,8-desaturase activity
GO:0016719
IDA
IBA
Gene Ontologycarotene 7,8-desaturase activity2 3
GO:0016719
IEA
InterProcarotene 7,8-desaturase activity
GO:0052886
IEA
GOA Database9,9'-dicis-carotene:quinone oxidoreductase activity
GO:0052886
IDA
Gene Ontology9,9'-dicis-carotene:quinone oxidoreductase activity2
GO:0052887
IEA
Gene Ontology7,9,9'-tricis-neurosporene:quinone oxidoreductase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM, IBA
Gene Ontologychloroplast3 4
GO:0009536
IEA
GOA Databaseplastid
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope5
GO:0009509
IEA
GOA Databasechromoplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014103 Zeta-carotene desaturase
IPR036188 FAD/NAD(P)-binding domain superfamily
IPR002937 Amine oxidase
Mapman id Description
9.1.6.1.4 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.zeta-carotene desaturase (ZDS)