Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 6.4e-244 847.0 448 100.0
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.3e-220 769.6 448 91.5
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.5e-212 740.7 450 88.7
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 2.8e-207 725.3 449 86.6
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.3e-191 673.3 453 80.4
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 3.5e-189 665.2 458 78.8
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 8.5e-188 660.6 457 77.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.5e-184 649.8 455 77.4
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.2e-183 646.0 454 76.7
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 3.7e-183 645.2 451 77.8
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.4e-182 643.3 464 76.7
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.8e-182 642.9 454 76.7
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.4e-182 642.5 454 76.2
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.0e-181 639.4 456 75.9
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 3.5e-181 638.6 455 76.3
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 8.6e-180 634.0 456 74.8
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 9.5e-179 630.6 453 76.2
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.6e-178 629.8 454 75.6
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 4.7e-178 628.2 457 74.8
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 6.1e-178 627.9 454 75.8
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.0e-177 627.1 455 76.3
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.4e-177 626.7 457 74.4
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.0e-177 625.5 454 75.3
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.0e-177 625.2 454 75.6
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 8.9e-177 624.0 458 74.7
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.2e-176 623.6 460 74.8
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.6e-176 622.5 451 74.3
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.4e-176 622.1 459 74.9
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 3.4e-176 622.1 457 75.5
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 5.7e-176 621.3 460 74.3
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 9.8e-176 620.5 457 75.1
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 9.8e-176 620.5 449 75.1
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.8e-175 619.0 451 74.3
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 6.3e-175 617.8 448 75.0
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 8.3e-175 617.5 454 74.0
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 8.3e-175 617.5 449 74.2
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.1e-174 617.1 455 74.5
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.8e-174 616.3 448 74.8
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.4e-174 615.9 455 74.5
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 4.1e-174 615.1 455 74.3
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 7.0e-174 614.4 455 73.6
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.5e-173 612.1 463 73.7
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 7.8e-173 610.9 448 73.9
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.0e-172 610.5 451 74.3
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 3.8e-172 608.6 453 74.2
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.0e-172 608.2 455 73.0
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 6.6e-172 607.8 461 72.0
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.5e-171 606.7 460 73.9
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.9e-171 606.3 451 75.4
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.5e-171 605.9 448 74.1
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 5.6e-171 604.7 463 73.2
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.6e-170 603.2 451 73.4
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 4.7e-170 601.7 456 72.6
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 4.0e-169 598.6 456 72.4
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 5.2e-169 598.2 451 72.9
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 6.8e-169 597.8 458 71.0
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.0e-168 596.3 362 84.5
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.8e-168 594.7 464 71.8
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 9.8e-168 594.0 453 70.9
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.3e-167 593.6 430 75.3
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.9e-167 591.7 461 71.6
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.9e-167 591.7 461 71.6
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 4.1e-166 588.6 451 72.9
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 7.0e-166 587.8 454 70.5
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.6e-165 586.6 453 70.2
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.8e-165 584.3 453 69.5
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 7.8e-165 584.3 449 70.8
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.0e-164 582.4 453 70.0
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 3.9e-164 582.0 450 70.2
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.3e-163 578.9 454 69.2
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 7.3e-163 577.8 455 68.8
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 9.5e-163 577.4 457 70.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.4e-161 573.5 466 68.5
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.3e-161 572.8 450 68.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 6.8e-161 571.2 453 69.8
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 6.8e-161 571.2 450 68.9
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 6.8e-161 571.2 452 69.7
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 6.8e-161 571.2 451 69.2
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.5e-160 570.1 449 68.4
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.5e-160 570.1 449 68.4
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.5e-160 570.1 449 68.4
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.5e-160 570.1 455 69.9
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.6e-160 569.3 456 70.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.3e-159 567.0 415 72.8
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.7e-159 566.6 458 69.7
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.7e-159 566.6 451 68.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.9e-159 565.8 451 68.5
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.9e-159 565.8 452 68.8
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 5.4e-158 561.6 453 67.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 3.0e-156 555.8 448 66.7
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-155 553.1 448 66.7
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 5.6e-155 551.6 450 66.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.2e-154 548.1 456 67.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.2e-154 548.1 456 67.1
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.8e-153 546.6 362 78.5
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 8.9e-153 544.3 341 80.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 6.4e-151 538.1 444 66.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.6e-146 522.3 402 70.4
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 4.7e-146 521.9 363 73.0
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.2e-145 518.5 452 64.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 5.8e-144 515.0 455 64.6
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.8e-138 496.1 454 61.9
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.3e-135 487.3 307 83.7
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.3e-132 477.2 320 77.2
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.6e-130 470.3 311 78.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.4e-128 462.6 290 82.1
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.7e-117 426.4 282 78.4
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.7e-117 426.4 405 58.3
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.8e-116 423.7 374 61.2
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.1e-114 416.8 376 60.4
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 8.2e-114 414.8 371 59.8
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 8.2e-114 414.8 299 72.2
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.2e-112 411.0 281 78.3
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 5.8e-112 408.7 280 72.9
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 4.9e-111 405.6 372 58.6
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.9e-111 405.6 371 57.1
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.8e-100 370.5 364 57.1
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.3e-99 365.9 366 56.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.2e-98 363.6 319 62.1
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.6e-96 356.7 336 58.6
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.2e-94 349.7 378 54.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 8.8e-92 341.7 361 52.4
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 6.3e-90 335.5 381 50.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.8e-89 334.0 369 52.8
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 5.2e-84 315.8 383 47.3
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.8e-82 310.1 243 68.3
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 6.5e-71 272.3 332 50.6
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.8e-52 211.1 345 42.0
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 8.3e-50 202.2 150 69.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.7e-45 186.4 222 50.5
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.1e-41 173.3 163 55.8
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.9e-39 166.8 127 66.1
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 8.3e-34 149.1 157 52.9
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.1e-33 146.0 83 81.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.6e-31 139.0 113 61.9
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-30 138.7 171 48.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 7.1e-25 119.4 73 84.9
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.8e-21 106.7 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 5.4e-17 93.2 149 41.6
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.6e-13 81.6 75 50.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.9e-11 72.4 89 49.4
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 6.0e-08 63.2 165 32.1


User provided reference genes

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