Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 3.9e-254 880.9 436 100.0
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 3.3e-192 675.2 368 92.1
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 3.6e-159 565.5 422 69.0
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 3.4e-149 532.3 434 63.4
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.6e-146 523.5 412 65.5
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 1.6e-146 523.5 421 62.7
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 5.1e-145 518.5 424 65.8
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.3e-144 515.8 425 62.6
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.3e-144 515.8 424 62.5
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 5.6e-144 515.0 433 62.1
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 9.6e-144 514.2 433 62.1
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 7.6e-141 504.6 423 61.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.7e-140 503.4 458 60.3
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 3.2e-139 499.2 423 62.4
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 3.0e-137 492.7 425 60.2
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.5e-136 490.3 421 63.4
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.5e-136 489.6 427 60.7
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.6e-135 486.9 428 60.3
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.8e-135 485.3 424 59.4
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 1.4e-134 483.8 428 60.5
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.8e-134 483.4 404 64.6
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 3.1e-134 482.6 423 60.5
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 3.1e-134 482.6 420 60.2
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 4.0e-134 482.3 430 59.1
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 6.9e-134 481.5 432 59.3
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 2.6e-133 479.6 414 60.6
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.5e-133 478.8 416 59.9
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 3.8e-132 475.7 434 59.4
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.4e-131 473.8 419 59.2
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.5e-131 473.0 423 58.9
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 2.5e-131 473.0 421 60.3
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 4.2e-131 472.2 428 57.5
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 7.1e-131 471.5 427 56.9
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 9.3e-131 471.1 426 57.3
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.2e-130 470.7 424 57.8
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.6e-130 470.3 413 61.5
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 2.7e-130 469.5 429 59.2
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 3.5e-130 469.2 457 55.8
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 4.6e-130 468.8 420 59.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 6.1e-130 468.4 421 59.1
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.0e-129 467.6 429 59.0
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.8e-129 466.8 427 58.1
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 6.7e-129 464.9 418 59.6
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 8.7e-129 464.5 421 56.3
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 8.7e-129 464.5 428 57.9
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.1e-128 464.2 419 58.9
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.3e-127 460.7 419 58.7
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 4.8e-127 458.8 427 56.4
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 6.3e-127 458.4 424 56.1
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.1e-126 457.6 419 58.0
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.1e-126 457.6 443 55.8
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.8e-126 456.8 421 57.5
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 3.1e-126 456.1 423 58.2
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 9.0e-126 454.5 423 56.7
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 1.2e-125 454.1 421 56.5
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 2.0e-125 453.4 424 56.8
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 5.9e-125 451.8 426 60.1
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 7.7e-125 451.4 418 57.9
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.3e-124 450.7 389 60.9
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.7e-124 450.3 402 59.2
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 2.9e-124 449.5 427 57.6
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 8.5e-124 448.0 419 56.6
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 2.5e-123 446.4 490 50.8
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 4.2e-123 445.7 435 55.9
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 9.4e-123 444.5 424 57.3
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 7.9e-122 441.4 433 55.4
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.0e-121 441.0 421 56.5
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.0e-121 441.0 358 62.3
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.8e-121 440.3 367 61.6
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 3.9e-121 439.1 444 54.7
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.9e-121 439.1 418 57.4
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 3.9e-121 439.1 395 59.7
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 6.7e-121 438.3 421 55.8
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-120 437.2 418 57.4
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.0e-120 436.8 423 54.8
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.3e-119 434.1 438 54.1
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.6e-117 426.4 418 56.2
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.4e-113 414.1 378 57.4
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 1.5e-112 410.6 363 59.0
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.8e-111 405.6 432 53.2
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 4.1e-110 402.5 358 60.1
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 8.5e-108 394.8 400 53.8
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.9e-107 393.7 359 61.0
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.1e-106 388.7 416 51.4
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 2.0e-104 383.6 339 59.9
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 2.4e-102 376.7 401 52.4
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.2e-101 374.4 421 51.5
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 7.7e-101 371.7 448 48.7
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.2e-99 366.3 358 55.6
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.3e-97 360.1 322 58.7
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 4.0e-97 359.4 337 55.5
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 5.7e-96 355.5 392 50.8
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 7.5e-96 355.1 387 49.9
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.1e-91 341.3 394 50.8
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.2e-85 321.2 516 40.7
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.3e-84 317.8 283 59.0
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 6.6e-84 315.5 428 43.9
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 8.6e-84 315.1 437 43.0
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 2.3e-81 307.0 278 58.6
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.6e-80 303.5 297 56.6
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 9.2e-78 295.0 355 49.3
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 7.8e-77 292.0 224 64.7
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 4.7e-74 282.7 521 37.2
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 4.3e-67 259.6 448 38.4
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 6.2e-66 255.8 283 51.2
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 6.2e-66 255.8 433 41.8
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 4.0e-65 253.1 329 44.7
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 5.2e-65 252.7 253 56.9
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 6.4e-63 245.7 423 40.4
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.1e-62 245.0 185 64.9
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 3.5e-61 240.0 219 56.2
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.3e-60 237.3 184 64.1
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 6.2e-58 229.2 309 47.2
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.7e-55 221.1 216 50.9
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 1.6e-53 214.5 354 39.5
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 3.6e-50 203.4 171 60.8
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 7.1e-46 189.1 158 62.0
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 2.1e-45 187.6 287 42.5
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 7.8e-45 185.7 184 52.7
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 3.6e-42 176.8 193 51.3
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 2.9e-39 167.2 431 33.2
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.2e-38 163.3 818 24.6
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 4.2e-38 163.3 158 58.2
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 3.3e-35 153.7 158 53.2
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.4e-33 148.3 91 79.1
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 3.4e-32 143.7 423 30.3
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 7.6e-32 142.5 108 60.2
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 3.2e-30 137.1 89 76.4
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 6.0e-29 132.9 95 70.5
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.8e-26 124.0 141 51.8
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 3.7e-26 123.6 420 26.0
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 1.4e-25 121.7 86 69.8
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 4.0e-25 120.2 122 49.2
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 4.2e-22 110.2 135 45.9
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 2.0e-16 91.3 349 28.4
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 5.9e-16 89.7 242 29.3
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 5.0e-15 86.7 268 29.1
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 7.2e-14 82.8 92 52.2
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 7.7e-08 62.8 61 52.5
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.9e-06 58.2 32 84.4


User provided reference genes

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