Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 2.9e-233 811.6 432 100.0
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 1.7e-193 679.5 405 90.4
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 2.1e-159 566.2 405 78.5
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 8.3e-156 554.3 408 77.0
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 2.7e-106 389.8 412 58.7
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 1.5e-101 374.0 412 59.7
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 2.4e-94 350.1 322 59.3
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 3.9e-89 332.8 321 58.6
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 4.8e-87 325.9 320 57.8
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 8.5e-84 315.1 350 53.7
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 1.9e-83 313.9 350 53.4
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 3.2e-83 313.2 358 52.0
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 5.5e-83 312.4 320 55.9
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 3.0e-81 306.6 324 55.2
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 1.7e-79 300.8 326 53.4
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 2.4e-78 297.0 355 51.5
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 2.0e-77 293.9 338 52.1
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 2.9e-76 290.0 356 51.1
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 6.5e-76 288.9 331 52.9
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 8.5e-76 288.5 348 50.6
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 2.5e-75 287.0 403 48.6
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 7.2e-75 285.4 358 49.2
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 1.2e-74 284.6 335 48.7
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 1.2e-74 284.6 365 48.8
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 1.4e-73 281.2 367 46.6
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 3.0e-73 280.0 335 48.4
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 5.2e-73 279.3 327 50.5
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 2.4e-70 270.4 348 47.7
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 7.7e-69 265.4 329 48.6
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.2e-68 263.8 374 47.9
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 1.9e-67 260.8 358 45.0
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.5e-67 260.4 368 47.8
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 7.2e-67 258.8 324 48.8
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 2.7e-66 256.9 347 48.7
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 3.6e-66 256.5 324 48.5
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 4.4e-64 249.6 327 50.2
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 1.3e-63 248.1 329 46.2
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 2.8e-63 246.9 316 48.7
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 1.4e-62 244.6 292 49.7
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 9.1e-62 241.9 384 41.4
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 2.0e-61 240.7 358 45.8
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.5e-59 234.6 325 45.2
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 3.2e-59 233.4 425 44.0
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.2e-58 231.5 363 42.4
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 3.6e-58 229.9 317 45.4
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 2.3e-57 227.3 322 47.8
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 3.4e-56 223.4 319 43.3
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 4.4e-56 223.0 328 44.8
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 5.7e-56 222.6 356 46.3
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 2.8e-55 220.3 322 47.2
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 3.7e-55 219.9 321 45.2
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 1.1e-54 218.4 430 37.4
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 7.0e-54 215.7 321 44.9
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 9.1e-54 215.3 321 44.9
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 1.2e-53 214.9 324 46.3
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.7e-53 213.8 332 42.5
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 4.5e-53 213.0 328 46.3
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 1.0e-52 211.8 336 40.8
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.0e-52 211.8 356 41.6
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 3.8e-52 209.9 394 38.8
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.5e-51 208.0 356 43.3
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 3.3e-51 206.8 328 45.1
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 7.2e-51 205.7 322 42.5
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.7e-50 203.0 411 38.0
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 8.0e-50 202.2 335 37.9
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.0e-49 200.3 419 37.2
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 5.2e-49 199.5 348 40.5
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 1.7e-47 194.5 352 37.2
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 2.2e-47 194.1 295 45.4
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 3.7e-47 193.4 264 47.3
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 4.9e-47 193.0 319 38.6
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 4.9e-47 193.0 352 37.2
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 6.3e-47 192.6 357 37.3
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 2.4e-46 190.7 352 39.5
FAN01G0294 Fragaria x ananassa HOM05D003719 ORTHO05D004116 3.2e-46 190.3 249 51.0
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 7.0e-46 189.1 324 39.8
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 7.0e-46 189.1 312 41.7
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 9.2e-46 188.7 331 42.6
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 2.7e-45 187.2 313 41.9
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 4.6e-45 186.4 359 37.3
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 1.3e-44 184.9 318 38.7
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 2.9e-44 183.7 326 38.3
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 3.9e-44 183.3 387 35.7
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 6.6e-44 182.6 322 40.4
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 6.6e-44 182.6 334 36.5
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 8.6e-44 182.2 331 40.8
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 1.1e-43 181.8 338 41.1
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 3.3e-43 180.3 322 40.1
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 1.2e-42 178.3 318 39.0
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 1.6e-42 177.9 337 39.5
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 1.6e-42 177.9 337 39.5
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 1.6e-42 177.9 337 39.5
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 1.6e-42 177.9 336 37.2
vmacro13601 Vaccinium macrocarpon HOM05D003719 ORTHO05D004116 2.8e-42 177.2 349 36.7
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 3.6e-42 176.8 339 39.2
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 3.6e-42 176.8 326 39.3
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 3.6e-42 176.8 339 39.2
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 4.7e-42 176.4 354 37.6
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 1.4e-41 174.9 318 38.4
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 6.8e-41 172.6 332 36.4
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 1.2e-40 171.8 423 38.5
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 1.5e-40 171.4 427 37.2
SGA_v2.0_scaffold95G28748 Striga asiatica HOM05D003719 ORTHO05D004116 1.5e-40 171.4 334 37.4
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 5.8e-40 169.5 337 35.9
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 7.5e-40 169.1 434 34.8
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 3.7e-39 166.8 333 36.9
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 3.7e-39 166.8 322 37.6
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 4.9e-39 166.4 322 37.0
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 6.4e-39 166.0 350 36.0
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 8.3e-39 165.6 319 38.6
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 2.4e-38 164.1 406 36.2
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 4.1e-38 163.3 341 37.2
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 1.7e-36 157.9 350 34.3
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 2.3e-36 157.5 314 38.2
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 3.9e-36 156.8 332 35.5
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 4.3e-35 153.3 319 34.8
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 7.3e-35 152.5 330 35.8
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 7.3e-35 152.5 314 37.9
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 9.5e-35 152.1 375 34.1
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 2.8e-34 150.6 351 36.2
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 6.2e-34 149.4 333 33.6
Hma1.2p1_0462F.1_g158020 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 8.1e-34 149.1 296 37.5
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 8.9e-33 145.6 319 32.9
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 1.2e-32 145.2 326 32.8
SHI15580 Sapria himalayana HOM05D003719 ORTHO05D004116 1.7e-31 141.4 263 38.8
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 2.2e-31 141.0 341 33.1
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 2.2e-31 141.0 324 34.3
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 8.3e-31 139.0 344 32.3
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 1.9e-30 137.9 253 40.7
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 4.1e-30 136.7 181 48.1
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 7.1e-30 136.0 348 35.1
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 7.1e-30 136.0 323 32.8
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 1.6e-29 134.8 344 34.6
AUR62014507 Chenopodium quinoa HOM05D003719 ORTHO05D004116 3.5e-29 133.7 292 33.9
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 1.7e-28 131.3 456 26.8
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 3.0e-28 130.6 327 33.0
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 8.6e-28 129.0 355 31.5
Ca_15283_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.9e-27 127.9 283 35.7
Ca_15419_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.9e-27 127.9 283 35.7
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 5.6e-27 126.3 230 39.1
arahy.Tifrunner.gnm1.ann1.E07VAV Arachis hypogaea HOM05D003719 ORTHO05D004116 4.7e-26 123.2 334 30.2
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 6.2e-26 122.9 322 33.5
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 2.3e-25 120.9 453 25.2
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 4.0e-25 120.2 253 37.5
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 4.0e-25 120.2 313 32.9
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 1.2e-24 118.6 314 33.1
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 1.2e-24 118.6 194 37.1
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 2.0e-24 117.9 315 32.4
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 4.4e-24 116.7 314 32.5
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.7e-23 114.8 193 43.5
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 6.4e-23 112.8 239 36.4
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.4e-22 111.7 61 82.0
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 3.0e-20 104.0 265 33.6
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 1.5e-19 101.7 373 31.9
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 5.6e-19 99.8 318 29.6
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 5.6e-19 99.8 318 29.6
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 7.3e-19 99.4 123 40.7
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 1.2e-18 98.6 195 37.4
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 1.2e-18 98.6 195 37.4
Ah.05g177090 Amaranthus hybridus HOM05D000308 ORTHO05D005285 2.8e-18 97.4 296 29.4
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 4.7e-18 96.7 67 67.2
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 1.1e-17 95.5 67 65.7
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 1.4e-17 95.1 64 62.5
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 2.4e-17 94.4 74 56.8
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 3.1e-17 94.0 97 52.6
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 5.2e-17 93.2 81 51.9
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 6.8e-17 92.8 58 67.2
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.2e-16 92.0 344 26.5
PSO349G0045 Papaver somniferum HOM05D003719 ORTHO05D004116 1.5e-16 91.7 231 33.3
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 3.4e-16 90.5 84 48.8
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 3.4e-16 90.5 316 29.1
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 6.4e-15 86.3 66 57.6
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 1.1e-14 85.5 198 33.3
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 1.9e-14 84.7 71 52.1
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.5e-13 80.5 138 37.0
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 1.0e-12 79.0 318 28.0
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 3.9e-12 77.0 88 45.5
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 5.1e-12 76.6 88 44.3
PSO732G0588 Papaver somniferum HOM05D003719 ORTHO05D004116 5.1e-12 76.6 65 58.5
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 8.1e-10 69.3 89 37.1
arahy.Tifrunner.gnm1.ann1.FLAY3S Arachis hypogaea HOM05D003719 ORTHO05D004116 3.1e-09 67.4 70 41.4
arahy.Tifrunner.gnm1.ann1.SX0HJ3 Arachis hypogaea HOM05D022377 ORTHO05D004116 4.4e-08 63.5 75 36.0
Aqoxy7G02797 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 5.8e-08 63.2 81 38.3
arahy.Tifrunner.gnm1.ann1.ACR8J8 Arachis hypogaea HOM05D022377 ORTHO05D004116 5.8e-08 63.2 89 33.7
HPP92_026156 Vanilla planifolia HOM05D003719 ORTHO05D004116 5.8e-08 63.2 202 30.7
BcaC05g27979 Brassica carinata HOM05D040424 ORTHO05D032974 4.2e-06 57.0 52 57.7


User provided reference genes

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