Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 0.0e+00 1339.7 673 100.0
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 0.0e+00 1099.0 673 84.2
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 9.2e-312 1073.2 673 81.4
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 1.6e-278 962.6 674 72.1
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 3.6e-275 951.4 673 70.7
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 1.2e-273 946.4 673 71.9
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.9e-271 939.1 673 71.2
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 5.4e-271 937.6 673 69.7
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 9.3e-271 936.8 672 70.8
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 6.6e-269 930.6 672 70.8
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.5e-268 929.5 672 70.5
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 3.1e-266 921.8 673 71.0
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 5.3e-266 921.0 673 71.0
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.5e-265 919.5 673 70.3
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.0e-265 919.1 673 70.6
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 2.0e-265 919.1 673 69.4
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 4.5e-265 917.9 673 69.4
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 4.5e-265 917.9 673 69.7
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 7.6e-265 917.1 673 70.7
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 7.6e-265 917.1 674 69.3
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.7e-264 916.0 673 68.9
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 2.2e-264 915.6 673 68.9
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 4.6e-262 907.9 673 69.1
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 7.9e-262 907.1 669 69.1
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 7.9e-262 907.1 695 66.5
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 6.7e-261 904.0 673 68.4
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 6.7e-261 904.0 673 68.5
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.9e-260 902.5 673 68.4
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.5e-260 902.1 673 67.8
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 3.3e-260 901.7 688 67.7
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.6e-259 899.4 672 67.6
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 6.2e-259 897.5 673 67.6
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 6.2e-259 897.5 673 67.5
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 8.1e-259 897.1 673 68.2
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 6.9e-258 894.0 677 67.2
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 1.2e-257 893.3 674 67.5
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 2.6e-257 892.1 674 67.4
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 2.6e-257 892.1 674 67.4
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 2.6e-257 892.1 683 67.2
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 5.8e-257 891.0 674 67.4
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 5.8e-257 891.0 673 67.8
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 5.8e-257 891.0 673 68.2
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.0e-256 890.2 683 66.8
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 1.7e-256 889.4 683 66.6
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.9e-255 885.9 683 66.9
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 4.2e-255 884.8 680 66.5
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 4.2e-255 884.8 683 66.6
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 9.3e-255 883.6 683 66.9
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.7e-254 882.1 683 66.6
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 1.8e-253 879.4 683 66.3
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 3.9e-253 878.2 673 66.7
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 3.9e-253 878.2 679 67.2
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 8.7e-253 877.1 700 64.7
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 8.7e-253 877.1 674 67.2
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 1.5e-252 876.3 626 69.8
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 2.5e-252 875.5 683 66.0
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 2.5e-252 875.5 683 66.2
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.3e-252 875.2 673 66.6
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.3e-252 874.8 673 66.6
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 4.3e-252 874.8 683 66.3
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 9.6e-252 873.6 673 66.3
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.3e-251 873.2 683 65.9
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.1e-251 872.5 673 66.6
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 2.4e-250 869.0 651 68.0
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 1.2e-249 866.7 673 66.4
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 3.4e-249 865.1 683 65.9
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 7.6e-249 864.0 631 68.9
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 1.1e-247 860.1 679 66.0
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 1.9e-247 859.4 676 65.1
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.9e-247 859.4 673 65.2
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 2.5e-247 859.0 675 66.1
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 3.2e-247 858.6 685 64.8
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 1.2e-246 856.7 711 63.9
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.2e-246 856.7 673 65.1
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 2.1e-246 855.9 673 67.5
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.8e-245 852.8 674 65.7
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.8e-245 852.8 673 64.6
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.5e-244 849.7 684 64.5
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.7e-243 845.1 705 64.7
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 6.9e-242 840.9 673 64.3
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 7.7e-241 837.4 673 64.6
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.2e-239 832.0 673 64.3
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 3.2e-239 832.0 650 65.4
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 2.1e-238 829.3 573 71.2
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 6.1e-238 827.8 672 63.1
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 7.9e-238 827.4 674 63.6
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 2.5e-236 822.4 671 62.9
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 9.7e-236 820.5 652 64.3
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.3e-235 820.1 686 61.8
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 1.7e-232 809.7 673 62.7
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.9e-231 806.2 810 55.3
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.5e-231 805.8 606 68.2
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 1.1e-228 797.0 673 64.2
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 5.7e-228 794.7 667 64.2
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.8e-226 789.6 673 62.0
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.8e-219 765.8 683 59.3
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.1e-218 763.8 597 65.8
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 4.1e-218 761.9 676 59.8
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 7.0e-218 761.1 681 58.9
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 5.9e-217 758.1 634 62.8
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.9e-215 753.1 677 59.8
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 3.2e-215 752.3 582 66.3
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 3.0e-213 745.7 681 57.7
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 4.4e-212 741.9 575 67.3
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.8e-211 739.2 677 58.3
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 8.3e-211 737.6 676 57.4
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.7e-209 732.6 677 58.1
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 2.7e-209 732.6 868 50.3
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 7.2e-207 724.5 682 57.0
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 2.1e-206 723.0 576 64.2
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 2.2e-203 713.0 647 57.7
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 2.0e-201 706.4 677 57.0
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 1.5e-196 690.3 683 55.6
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 4.3e-191 672.2 566 62.5
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.4e-189 667.2 492 67.9
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 1.2e-188 664.1 510 66.1
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 9.5e-183 644.4 596 57.4
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 1.9e-175 620.2 692 49.6
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.1e-174 616.7 466 69.1
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 6.2e-174 615.1 629 55.2
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 4.0e-173 612.5 548 59.9
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 6.4e-171 605.1 682 49.3
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 3.5e-169 599.4 639 49.6
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.0e-156 557.0 686 47.8
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 9.6e-151 538.1 444 62.4
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.4e-146 524.2 845 40.6
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 6.0e-145 518.8 449 61.9
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 3.3e-143 513.1 430 63.7
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 3.5e-137 493.0 687 41.0
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.3e-136 491.1 675 42.1
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 2.2e-118 430.6 367 64.0
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.4e-117 427.2 374 61.5
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 7.4e-111 405.6 270 74.4
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 4.4e-103 379.8 371 55.8
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.3e-102 375.9 337 59.6
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.5e-99 365.9 506 43.7
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.7e-97 359.8 297 64.3
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.2e-96 356.3 302 61.9
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.6e-95 354.0 672 36.0
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.6e-84 318.2 348 51.7
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.9e-78 296.6 295 53.9
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 6.6e-75 286.2 203 72.4
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.6e-75 285.8 220 65.0
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.3e-72 277.7 300 50.7
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.5e-71 272.7 197 71.6
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 1.5e-66 258.5 241 55.2
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.5e-66 258.5 206 63.1
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.2e-63 248.8 206 62.1
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 6.4e-62 243.0 187 67.4
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 1.1e-61 242.3 184 67.4
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 7.8e-60 236.1 242 51.7
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 2.5e-58 231.1 242 51.2
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 9.5e-58 229.2 265 49.1
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 2.1e-57 228.0 516 33.5
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 6.2e-57 226.5 183 63.4
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.4e-53 215.3 142 69.0
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 6.0e-52 209.9 141 77.3
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.5e-50 204.5 120 80.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 3.3e-50 204.1 120 76.7
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 5.6e-50 203.4 120 77.5
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 4.0e-48 197.2 116 79.3
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 3.4e-47 194.1 120 75.0
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 7.6e-47 193.0 120 74.2
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.0e-44 183.3 120 70.0
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 1.6e-41 175.3 145 62.1
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.8e-35 155.2 224 42.4
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.7e-30 138.7 183 49.2
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.6e-28 132.1 236 41.1
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 2.3e-27 128.3 180 43.9
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 8.1e-25 119.8 123 51.2
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 4.0e-24 117.5 66 83.3
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.6e-23 114.8 75 69.3
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.9e-22 110.5 103 61.2
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 1.1e-18 99.4 148 39.2
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 7.4e-18 96.7 68 64.7
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 2.8e-17 94.7 125 46.4
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 8.2e-17 93.2 101 50.5
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 3.9e-11 74.3 60 56.7
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 4.8e-09 67.4 45 64.4
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 1.0e-06 59.7 51 58.8
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 3.8e-06 57.8 51 68.6
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 3.8e-06 57.8 51 68.6
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 6.5e-06 57.0 51 68.6
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 8.5e-06 56.6 58 53.4


User provided reference genes

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