Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 8.7e-235 817.4 714 100.0
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.2e-204 717.2 721 90.8
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 6.6e-142 508.8 722 72.6
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 1.5e-130 471.1 722 77.7
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 2.9e-129 466.8 624 82.1
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.9e-128 464.2 721 74.5
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 9.3e-128 461.8 721 74.2
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 2.7e-127 460.3 728 75.7
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 7.9e-127 458.8 721 73.8
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.3e-124 451.4 717 73.4
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.3e-124 451.4 729 71.6
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 4.8e-124 449.5 717 72.8
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 4.8e-124 449.5 710 76.1
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.4e-123 447.2 712 74.9
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 3.1e-123 446.8 712 76.3
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 4.0e-123 446.4 625 80.8
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 4.0e-123 446.4 625 80.8
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 9.0e-123 445.3 714 74.8
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 2.6e-122 443.7 697 73.7
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 6.4e-121 439.1 723 75.0
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.4e-120 436.0 625 80.8
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.6e-119 434.5 623 80.9
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 1.6e-119 434.5 631 77.3
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 1.3e-118 431.4 687 73.7
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 3.0e-118 430.3 614 75.9
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 9.0e-115 418.7 620 69.4
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 9.0e-115 418.7 713 70.1
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 1.2e-114 418.3 556 86.5
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 2.6e-114 417.2 721 71.6
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 7.6e-114 415.6 715 71.2
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 7.6e-114 415.6 715 74.1
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 4.2e-112 409.8 727 68.5
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 7.9e-111 405.6 719 70.4
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.5e-109 400.6 622 77.0
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 2.5e-109 400.6 693 74.2
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 1.8e-107 394.4 716 71.8
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.2e-106 391.7 730 69.5
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.7e-105 387.9 698 70.1
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 2.2e-105 387.5 724 65.9
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.4e-104 384.8 718 69.4
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 1.9e-104 384.4 694 70.7
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.5e-104 384.0 713 68.4
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.6e-103 381.3 673 73.3
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 6.1e-103 379.4 728 68.4
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.8e-102 377.9 625 75.7
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 2.3e-102 377.5 691 70.2
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 5.1e-102 376.3 708 68.5
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 8.7e-102 375.6 715 69.2
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.5e-101 374.8 735 68.6
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 5.7e-101 372.9 622 74.3
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 7.4e-101 372.5 624 74.7
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 7.4e-101 372.5 616 75.0
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.3e-100 371.7 626 75.2
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.2e-100 370.9 675 64.9
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 6.3e-100 369.4 724 65.9
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 8.2e-100 369.0 710 67.0
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.1e-99 368.6 699 67.2
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.1e-99 368.6 592 76.5
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.8e-99 367.9 699 67.1
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 2.4e-99 367.5 710 66.6
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.4e-99 367.5 697 68.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 6.9e-99 365.9 704 67.8
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.2e-98 365.2 454 70.7
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.2e-98 365.2 615 75.1
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 7.7e-98 362.5 700 66.9
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 1.3e-97 361.7 620 75.3
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.7e-97 361.3 711 65.1
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 3.8e-97 360.1 573 77.8
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 6.5e-97 359.4 580 77.6
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 3.2e-96 357.1 626 74.0
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.2e-95 355.1 713 67.5
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.0e-94 352.1 407 74.4
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 3.0e-94 350.5 723 67.1
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 8.8e-94 349.0 624 74.0
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 4.3e-93 346.7 695 68.8
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 2.8e-92 344.0 703 68.7
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 4.8e-92 343.2 713 69.6
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.4e-91 341.7 615 74.3
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 4.5e-90 336.7 678 68.9
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 6.5e-89 332.8 365 48.8
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 3.2e-88 330.5 619 71.1
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 3.6e-87 327.0 681 64.3
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 3.6e-87 327.0 710 68.6
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.3e-86 324.3 614 73.0
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 9.7e-85 318.9 678 53.7
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 2.8e-84 317.4 716 59.1
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 8.2e-84 315.8 505 85.1
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.2e-82 312.0 373 48.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 2.6e-82 310.8 678 66.8
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 5.9e-82 309.7 560 70.7
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 6.5e-81 306.2 617 72.3
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 8.5e-81 305.8 732 64.9
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 9.4e-80 302.4 234 62.8
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 9.7e-77 292.4 682 67.4
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 4.8e-76 290.0 358 47.5
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.2e-69 268.9 397 68.3
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 1.9e-56 224.9 489 80.6
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 8.9e-54 216.1 504 77.6
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 2.0e-53 214.9 504 74.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 2.3e-49 201.4 543 67.2
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.3e-49 201.4 334 61.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 6.2e-39 166.8 128 60.9
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 4.6e-34 150.6 237 85.2
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 6.8e-30 136.7 230 34.3
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 8.4e-28 129.8 80 80.0
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 2.4e-27 128.3 230 31.3
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 4.1e-27 127.5 86 72.1
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.7e-26 124.8 178 42.7
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 5.1e-25 120.6 77 77.9
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 2.1e-23 115.2 194 30.4
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 3.1e-22 111.3 66 84.8
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.4e-21 107.5 74 75.7
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 5.6e-16 90.5 76 61.8
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.4e-11 75.9 56 69.6
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 2.1e-10 72.0 111 41.4
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.3e-09 69.3 48 70.8
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 8.1e-07 60.1 178 23.0
Cc03_g16010 Coffea canephora HOM05D000001 ORTHO05D009766 1.4e-06 59.3 129 26.4
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 2.4e-06 58.5 163 23.3
ECA240G0024 Erigeron canadensis HOM05D003056 ORTHO05D003422 3.1e-06 58.2 147 23.8
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 4.0e-06 57.8 179 22.9
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 5.3e-06 57.4 150 24.7


User provided reference genes

Program Settings