Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 3.8e-163 578.2 306 100.0
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 2.2e-147 525.8 306 89.5
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 1.3e-139 500.0 306 87.3
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 5.0e-139 498.0 306 86.3
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.1e-138 496.9 306 82.7
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.5e-138 495.7 306 86.6
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 3.2e-138 495.4 305 87.2
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.2e-138 495.0 306 85.9
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.2e-137 493.4 303 86.8
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.0e-136 490.3 305 83.0
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 8.8e-136 487.3 306 81.4
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 8.8e-136 487.3 306 80.7
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.6e-135 485.7 306 80.4
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 4.4e-135 485.0 306 80.7
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 5.7e-135 484.6 306 80.4
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.5e-135 484.2 306 80.4
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 9.8e-135 483.8 306 80.1
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 1.3e-134 483.4 305 81.0
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.7e-134 483.0 305 80.7
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 2.8e-134 482.3 306 79.7
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 2.8e-134 482.3 306 79.7
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 6.3e-134 481.1 306 80.1
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 6.3e-134 481.1 306 79.4
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 8.3e-134 480.7 303 82.2
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.8e-133 479.6 306 81.0
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 2.4e-133 479.2 306 79.4
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 2.4e-133 479.2 303 79.9
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 5.4e-133 478.0 306 79.1
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 1.2e-132 476.9 303 79.2
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 1.6e-132 476.5 305 80.0
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.0e-132 476.1 306 79.1
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 2.0e-132 476.1 306 79.1
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 2.0e-132 476.1 303 79.2
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 3.5e-132 475.3 306 79.1
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 3.5e-132 475.3 306 79.1
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.5e-132 475.3 306 78.4
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 7.7e-132 474.2 306 79.4
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.0e-131 473.8 306 78.4
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.7e-131 473.0 303 78.5
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 2.9e-131 472.2 306 78.4
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 2.9e-131 472.2 306 78.4
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 3.8e-131 471.9 306 78.4
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 6.6e-131 471.1 306 78.1
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 6.6e-131 471.1 304 79.3
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.9e-130 469.5 306 78.4
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 2.5e-130 469.2 306 78.4
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.3e-130 468.8 306 77.8
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 5.5e-130 468.0 303 78.2
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 2.8e-129 465.7 306 76.8
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 2.8e-129 465.7 306 76.8
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 3.6e-129 465.3 306 76.8
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 3.6e-129 465.3 306 76.8
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 3.6e-129 465.3 306 76.8
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 8.0e-129 464.2 306 76.5
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 8.0e-129 464.2 306 76.5
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 8.0e-129 464.2 305 75.7
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.4e-128 463.4 305 78.0
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 2.3e-128 462.6 302 77.2
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.0e-128 461.8 306 82.0
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 8.9e-128 460.7 303 77.9
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 1.2e-127 460.3 303 77.9
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 1.5e-127 459.9 307 77.2
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 4.4e-127 458.4 306 76.5
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 9.8e-127 457.2 304 76.6
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 9.8e-127 457.2 304 76.6
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 2.8e-126 455.7 303 76.2
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 3.7e-126 455.3 302 76.2
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 4.9e-126 454.9 305 76.7
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 8.3e-126 454.1 305 76.4
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 8.3e-126 454.1 305 76.1
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.1e-125 453.8 306 76.1
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.4e-125 453.4 302 76.5
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 2.4e-125 452.6 306 75.5
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 3.1e-125 452.2 305 75.7
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 4.1e-125 451.8 303 75.2
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 5.4e-125 451.4 303 75.6
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 9.2e-125 450.7 303 76.2
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.2e-124 450.3 302 75.2
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 2.0e-124 449.5 302 77.2
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.0e-124 449.5 307 75.6
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 5.9e-124 448.0 306 75.2
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 5.9e-124 448.0 307 75.6
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 5.9e-124 448.0 302 75.8
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.0e-123 447.2 302 75.8
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.0e-123 447.2 302 76.8
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.3e-123 446.8 302 76.8
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 1.7e-123 446.4 303 74.9
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.7e-123 446.4 306 79.7
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.7e-123 446.4 302 75.2
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 2.9e-123 445.7 304 74.0
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 3.8e-123 445.3 303 73.9
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 5.0e-123 444.9 299 75.6
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 5.0e-123 444.9 304 76.3
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 8.6e-123 444.1 316 75.9
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 8.6e-123 444.1 304 75.3
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 8.6e-123 444.1 303 74.9
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.9e-122 443.0 303 74.3
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.5e-122 442.6 304 72.7
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 9.5e-122 440.7 340 69.7
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 3.6e-121 438.7 303 73.3
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 1.4e-120 436.8 306 74.5
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.3e-120 436.0 303 72.9
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 3.1e-120 435.6 305 73.1
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 4.0e-120 435.3 302 72.5
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 4.0e-120 435.3 302 72.2
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 5.2e-120 434.9 307 76.9
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 8.9e-120 434.1 299 72.2
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 2.6e-119 432.6 303 72.3
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.4e-119 431.8 306 75.8
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 5.8e-119 431.4 303 71.3
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 5.8e-119 431.4 309 70.9
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 7.5e-119 431.0 303 72.6
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 7.5e-119 431.0 302 72.2
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 9.8e-119 430.6 299 71.6
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 1.3e-118 430.3 305 74.4
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.3e-118 430.3 306 75.2
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.7e-118 429.9 306 76.1
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.2e-118 429.5 306 75.2
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 2.9e-118 429.1 302 71.2
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 3.7e-118 428.7 302 71.2
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 3.7e-118 428.7 303 72.9
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 4.9e-118 428.3 299 71.6
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 1.1e-117 427.2 303 71.3
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.4e-117 426.8 306 74.8
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.0e-116 422.9 446 54.0
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 4.0e-112 408.7 305 72.5
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.9e-110 402.5 274 76.6
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 8.3e-110 401.0 289 70.2
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.4e-109 399.4 304 70.1
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 2.4e-109 399.4 326 66.3
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 2.3e-107 392.9 299 67.2
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.1e-106 390.6 317 66.9
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 5.6e-106 388.3 234 82.5
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 3.4e-103 379.0 268 70.9
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 1.3e-102 377.1 241 78.4
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 2.4e-101 372.9 272 70.2
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 9.2e-101 370.9 313 64.2
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.2e-100 370.5 302 62.9
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 2.7e-100 369.4 310 62.6
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 2.3e-99 366.3 302 62.3
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 8.6e-99 364.4 302 61.9
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 1.4e-96 357.1 232 76.7
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 1.9e-93 346.7 302 57.6
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 1.7e-91 340.1 311 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 6.2e-89 331.6 306 60.8
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 6.6e-83 311.6 218 73.9
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 5.8e-79 298.5 285 59.6
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 7.9e-76 288.1 300 52.7
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 2.9e-70 269.6 302 47.7
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 8.2e-65 251.5 304 47.0
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 1.1e-61 241.1 300 44.7
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 1.8e-59 233.8 296 42.6
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 3.7e-57 226.1 162 69.1
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 4.5e-55 219.2 166 69.3
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 2.9e-54 216.5 128 84.4
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 8.5e-54 214.9 169 63.3
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 9.1e-48 194.9 117 84.6
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 6.5e-22 109.0 56 91.1
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 1.6e-20 104.4 66 77.3
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 8.0e-20 102.1 124 47.6
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.4e-19 101.3 74 68.9
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.8e-19 100.9 152 42.1
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 3.4e-18 96.7 90 57.8
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 7.5e-18 95.5 57 78.9
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 1.6e-15 87.8 85 56.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 3.5e-15 86.7 81 56.8
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.9e-14 83.6 81 55.6
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 8.6e-14 82.0 83 55.4
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 7.2e-13 79.0 81 53.1
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 6.1e-12 75.9 73 56.2
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 6.1e-12 75.9 73 56.2
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 2.4e-08 63.9 32 90.6
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 1.2e-07 61.6 47 66.0
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 1.6e-07 61.2 46 60.9


User provided reference genes

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