Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0120200 Salix brachista HOM05D004154 ORTHO05D004988 1.5e-85 319.7 182 100.0
Sabra05G0040500 Salix brachista HOM05D004154 ORTHO05D004988 1.2e-79 300.1 175 94.9
SabraUnG0000800 Salix brachista HOM05D004154 ORTHO05D004988 3.5e-79 298.5 175 96.0
Sabra10G0054600 Salix brachista HOM05D004154 ORTHO05D004988 6.5e-78 294.3 174 96.0
Sabra13G0046900 Salix brachista HOM05D004154 ORTHO05D004988 3.2e-77 292.0 176 95.5
Sabra17G0001600 Salix brachista HOM05D004154 ORTHO05D004988 4.2e-77 291.6 175 94.9
Sabra19G0042900 Salix brachista HOM05D004154 ORTHO05D004988 2.3e-67 259.2 175 78.9
Potri.001G093700 Populus trichocarpa HOM05D004154 ORTHO05D004988 3.7e-65 251.9 158 92.4
Sabra01G0069600 Salix brachista HOM05D004154 ORTHO05D004988 1.6e-63 246.5 154 93.5
Potri.003G138000 Populus trichocarpa HOM05D004154 ORTHO05D004988 9.5e-61 237.3 157 84.7
ClCG07G014910 Citrullus lanatus HOM05D004154 ORTHO05D004988 1.3e-46 190.3 152 75.0
CsaV3_4G006440 Cucumis sativus L. HOM05D004154 ORTHO05D004988 6.6e-46 188.0 168 69.0
MELO3C016306.2 Cucumis melo HOM05D004154 ORTHO05D004988 3.3e-45 185.7 152 75.0
Ciclev10023918m.g Citrus clementina HOM05D004154 ORTHO05D004988 3.6e-44 182.2 147 75.5
QL02p031322 Quercus lobata HOM05D004154 ORTHO05D004988 3.1e-43 179.1 148 72.3
Sed0017887 Sechium edule HOM05D004154 ORTHO05D004988 5.2e-43 178.3 152 71.1
Cfa012835 Carpinus fangiana HOM05D004154 ORTHO05D004988 8.9e-43 177.6 180 66.7
CiPaw.11G123500 Carya illinoinensis HOM05D004154 ORTHO05D004988 3.4e-42 175.6 181 65.7
Prupe.5G115800 Prunus persica HOM05D004154 ORTHO05D004988 1.3e-41 173.7 147 73.5
Eucgr.E00847 Eucalyptus grandis HOM05D004154 ORTHO05D004988 1.7e-41 173.3 150 70.0
PGR042G2687 Punica granatum HOM05D004154 ORTHO05D004988 3.7e-41 172.2 170 64.1
Thecc.03G293700 Theobroma cacao HOM05D004154 ORTHO05D004988 4.9e-41 171.8 146 74.0
Duzib068G1416 Durio zibethinus HOM05D004154 ORTHO05D004988 6.4e-41 171.4 180 63.3
PGSC0003DMG400012298 Solanum tuberosum HOM05D004154 ORTHO05D004988 8.3e-41 171.0 147 63.9
Cpa.g.sc122.41 Carica papaya HOM05D004154 ORTHO05D004988 1.9e-40 169.9 176 61.9
Sopen08g030360 Solanum pennellii HOM05D004154 ORTHO05D004988 3.2e-40 169.1 147 69.4
Cc08_g15820 Coffea canephora HOM05D004154 ORTHO05D004988 7.1e-40 167.9 154 56.5
Lj4g0021447 Lotus japonicus HOM05D004154 ORTHO05D004988 1.2e-39 167.2 155 69.0
Phvul.002G296700 Phaseolus vulgaris HOM05D004154 ORTHO05D004988 1.2e-39 167.2 145 73.1
MD06G1103000 Malus domestica HOM05D004154 ORTHO05D004988 2.7e-39 166.0 152 64.5
HanXRQChr17g0535161 Helianthus annuus HOM05D004154 ORTHO05D004988 4.6e-39 165.2 157 55.4
BcaNung01086 Brassica carinata HOM05D004154 ORTHO05D004988 1.3e-38 163.7 154 63.6
Ca_17492_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 1.7e-38 163.3 147 71.4
SalBow1G2286 Salvia bowleyana HOM05D004154 ORTHO05D004988 1.7e-38 163.3 175 58.9
Psat7g026240 Pisum sativum HOM05D004154 ORTHO05D004988 2.3e-38 162.9 146 71.2
Atru.chr2.763 Acer truncatum HOM05D004154 ORTHO05D004988 6.6e-38 161.4 146 70.5
Atru.chr9.2030 Acer truncatum HOM05D004154 ORTHO05D004988 6.6e-38 161.4 146 70.5
Atru.chr9.2037 Acer truncatum HOM05D004154 ORTHO05D001448 6.6e-38 161.4 146 70.5
ECA234G2690 Erigeron canadensis HOM05D004154 ORTHO05D004988 8.6e-38 161.0 147 53.7
THA.LOC104806434 Tarenaya hassleriana HOM05D004154 ORTHO05D004988 1.1e-37 160.6 153 66.0
SalBow1G6205 Salvia bowleyana HOM05D004154 ORTHO05D004988 1.5e-37 160.2 175 58.3
AT4G11080 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 1.9e-37 159.8 156 64.1
Lalb_Chr05g0224221 Lupinus albus HOM05D004154 ORTHO05D004988 2.5e-37 159.5 148 69.6
TAR374G1070 Trochodendron aralioides HOM05D004154 ORTHO05D004988 2.5e-37 159.5 157 67.5
Thhalv10025168m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 4.3e-37 158.7 156 62.2
Medtr8g099305 Medicago truncatula HOM05D004154 ORTHO05D004988 1.6e-36 156.8 148 68.2
Nn3g19070 Nelumbo nucifera HOM05D004154 ORTHO05D004988 2.8e-36 156.0 153 64.7
COL.COLO4_21713 Corchorus olitorius HOM05D004154 ORTHO05D004988 6.2e-36 154.8 98 77.6
Rhsim07G0083500 Rhododendron simsii HOM05D004154 ORTHO05D004988 6.2e-36 154.8 153 60.8
Duzib205G2047 Durio zibethinus HOM05D004154 ORTHO05D004988 8.1e-36 154.5 151 62.9
Hund11402 Selenicereus undatus HOM05D004154 ORTHO05D004988 8.1e-36 154.5 178 57.9
DCAR_027717 Daucus carota HOM05D004154 ORTHO05D004988 1.1e-35 154.1 146 65.8
BcaC09g50947 Brassica carinata HOM05D004154 ORTHO05D004988 1.4e-35 153.7 156 59.6
Sp6g06370 Schrenkiella parvula HOM05D004154 ORTHO05D004988 1.4e-35 153.7 162 61.7
arahy.Tifrunner.gnm1.ann1.1D56YB Arachis hypogaea HOM05D004154 ORTHO05D004988 1.8e-35 153.3 145 71.7
TWI60G1238 Tripterygium wilfordii HOM05D004154 ORTHO05D004988 1.8e-35 153.3 180 58.3
BcaC04g21100 Brassica carinata HOM05D004154 ORTHO05D004988 2.3e-35 152.9 155 65.2
C09p35690 Brassica napus HOM05D004154 ORTHO05D004988 2.3e-35 152.9 155 65.2
BolC9t56405H Brassica oleracea HOM05D004154 ORTHO05D004988 2.3e-35 152.9 155 65.2
Glyma.08G021700 Glycine max HOM05D004154 ORTHO05D004988 2.3e-35 152.9 145 70.3
A01p15110 Brassica napus HOM05D004154 ORTHO05D004988 3.1e-35 152.5 158 56.3
C01p19010 Brassica napus HOM05D004154 ORTHO05D004988 4.0e-35 152.1 157 59.2
BolC1t01827H Brassica oleracea HOM05D004154 ORTHO05D004988 4.0e-35 152.1 157 59.2
Nitab4.5_0000223g0250 Nicotiana tabacum HOM05D004154 ORTHO05D004988 4.0e-35 152.1 157 61.8
arahy.Tifrunner.gnm1.ann1.Y783I6 Arachis hypogaea HOM05D004154 ORTHO05D004988 5.2e-35 151.8 146 71.2
A09p28160 Brassica napus HOM05D004154 ORTHO05D004988 5.2e-35 151.8 155 64.5
BraA09t38379Z Brassica rapa HOM05D004154 ORTHO05D004988 5.2e-35 151.8 155 64.5
Thhalv10028648m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 5.2e-35 151.8 155 63.9
Solyc08g082070.3 Solanum lycopersicum HOM05D004154 ORTHO05D004988 5.2e-35 151.8 147 64.6
AUR62010814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 8.9e-35 151.0 142 64.1
AUR62019814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 8.9e-35 151.0 152 61.8
PSO384G3063 Papaver somniferum HOM05D004154 ORTHO05D004988 1.5e-34 150.2 157 58.0
Sp7g21760 Schrenkiella parvula HOM05D004154 ORTHO05D004988 1.5e-34 150.2 156 63.5
PSO135G0371 Papaver somniferum HOM05D004154 ORTHO05D004988 2.6e-34 149.4 157 57.3
BraA01t01449Z Brassica rapa HOM05D004154 ORTHO05D004988 3.4e-34 149.1 159 56.0
TPR.G3381 Trifolium pratense HOM05D004154 ORTHO05D004988 3.4e-34 149.1 145 68.3
VMungo0251G3674 Vigna mungo HOM05D004154 ORTHO05D004988 7.6e-34 147.9 145 66.9
Nitab4.5_0010205g0030 Nicotiana tabacum HOM05D004154 ORTHO05D004988 9.9e-34 147.5 163 60.7
Aa31LG6G7020 Aethionema arabicum HOM05D004154 ORTHO05D004988 1.3e-33 147.1 156 62.2
Carub.0007s1732 Capsella rubella HOM05D004154 ORTHO05D004988 2.9e-33 146.0 157 61.8
FAN18G2617 Fragaria x ananassa HOM05D004154 ORTHO05D004988 2.9e-33 146.0 92 75.0
CAN.G532.100 Capsicum annuum HOM05D004154 ORTHO05D004988 3.8e-33 145.6 155 59.4
Manes.02G012100 Manihot esculenta HOM05D004154 ORTHO05D004988 3.8e-33 145.6 134 67.2
Aa31LG5G23780 Aethionema arabicum HOM05D004154 ORTHO05D004988 4.9e-33 145.2 155 61.3
CARHR231190 Cardamine hirsuta HOM05D004154 ORTHO05D004988 4.9e-33 145.2 156 61.5
Glyma.05G215500 Glycine max HOM05D004154 ORTHO05D004988 4.9e-33 145.2 138 71.0
AL7G29550 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 6.4e-33 144.8 157 59.9
AT4G23800 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 6.4e-33 144.8 157 62.4
Carub.0006s2985 Capsella rubella HOM05D004154 ORTHO05D004988 6.4e-33 144.8 155 61.3
FAN18G0035 Fragaria x ananassa HOM05D004154 ORTHO05D004988 6.4e-33 144.8 130 72.3
vmacro13908 Vaccinium macrocarpon HOM05D004154 ORTHO05D004988 1.1e-32 144.1 175 51.4
RcHm_v2.0_Chr7g0195371 Rosa chinensis HOM05D004154 ORTHO05D004988 1.9e-32 143.3 97 71.1
SGA_v2.0_scaffold173G39085 Striga asiatica HOM05D004154 ORTHO05D004988 2.4e-32 142.9 172 57.0
Zm00001eb238060 Zea mays HOM05D004154 ORTHO05D004988 2.4e-32 142.9 148 58.8
Gohir.A11G024000 Gossypium hirsutum HOM05D004154 ORTHO05D004988 3.2e-32 142.5 175 57.1
GSVIVG01019504001 Vitis vinifera HOM05D004154 ORTHO05D004988 5.4e-32 141.7 99 71.7
FvH4_5g04120 Fragaria vesca HOM05D004154 ORTHO05D004988 7.1e-32 141.4 92 73.9
FAN13G2696 Fragaria x ananassa HOM05D004154 ORTHO05D004988 7.1e-32 141.4 92 73.9
Aqoxy7G00145 Aquilegia oxysepala HOM05D004154 ORTHO05D004988 2.7e-31 139.4 160 57.5
CARHR255520 Cardamine hirsuta HOM05D004154 ORTHO05D004988 3.5e-31 139.0 155 51.6
Gorai.007G025500 Gossypium raimondii HOM05D004154 ORTHO05D004988 6.0e-31 138.3 173 57.2
Migut.A00676 Erythranthe guttata HOM05D004154 ORTHO05D004988 7.8e-31 137.9 169 55.0
CSS0019694 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.3e-30 137.1 90 71.1
FAN04G1279 Fragaria x ananassa HOM05D004154 ORTHO05D004988 2.3e-30 136.3 89 74.2
FAN04G2754 Fragaria x ananassa HOM05D004154 ORTHO05D004988 2.3e-30 136.3 89 74.2
FAN08G1247 Fragaria x ananassa HOM05D004154 ORTHO05D004988 3.0e-30 136.0 89 73.0
AL6G45220 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 3.9e-30 135.6 143 63.6
Gohir.D11G023700 Gossypium hirsutum HOM05D004154 ORTHO05D004988 6.6e-30 134.8 173 57.2
CANSAT21G2399 Cannabis sativa HOM05D004154 ORTHO05D004988 1.1e-29 134.0 90 70.0
CDE04G1588 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 5.6e-29 131.7 165 50.9
EL10Ac5g12892 Beta vulgaris HOM05D004154 ORTHO05D004988 7.3e-29 131.3 90 67.8
MSTRG.25659 Avicennia marina HOM05D004154 ORTHO05D004988 3.6e-28 129.0 89 68.5
Peaxi162Scf00074g01143 Petunia axillaris HOM05D004154 ORTHO05D004988 3.6e-28 129.0 89 67.4
Manes.17G117281 Manihot esculenta HOM05D004154 ORTHO05D004988 6.2e-28 128.3 147 59.9
CDE03G0409 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 8.1e-28 127.9 93 61.3
Oeu061093.1 Olea europaea HOM05D004154 ORTHO05D004988 1.2e-26 124.0 125 60.8
Dinv38854 Davidia involucrata HOM05D000337 ORTHO05D000297 9.9e-26 120.9 81 69.1
ATR0594G018 Amborella trichopoda HOM05D004154 ORTHO05D004988 1.3e-25 120.6 131 53.4
MBI07_g24338_MAGBIO Magnolia biondii HOM05D004154 ORTHO05D004988 2.9e-25 119.4 92 63.0
ATR1100G049 Amborella trichopoda HOM05D004154 ORTHO05D004988 6.4e-25 118.2 97 55.7
Lsat_1_v5_gn_3_10260 Lactuca sativa HOM05D004154 ORTHO05D004988 1.4e-24 117.1 152 46.1
unitig_32.g11609 Utricularia gibba HOM05D004154 ORTHO05D004988 1.4e-24 117.1 169 52.1
Os02g0258250 Oryza sativa ssp. japonica HOM05D004154 ORTHO05D004988 2.4e-24 116.3 121 47.1
SEGI_07912 Sequoiadendron giganteum HOM05D004154 ORTHO05D012852 2.1e-23 113.2 155 48.4
Haze_08653 Corylus avellana HOM05D004154 ORTHO05D004988 8.7e-22 107.8 60 76.7
SEGI_25080 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 4.3e-21 105.5 93 55.9
Mapoly0026s0138 Marchantia polymorpha HOM05D004154 ORTHO05D004988 9.6e-21 104.4 167 34.1
Sabra06G0151600 Salix brachista HOM05D001043 ORTHO05D004988 9.6e-21 104.4 60 95.0
Pp3c11_8530 Physcomitrium patens HOM05D004154 ORTHO05D004988 4.8e-20 102.1 160 35.0
Pp3c7_20570 Physcomitrium patens HOM05D004154 ORTHO05D004988 2.6e-18 96.3 167 33.5
Sed0012262 Sechium edule HOM05D004154 ORTHO05D004988 1.4e-16 90.5 158 51.9
PSO063G0915 Papaver somniferum HOM05D004154 ORTHO05D004988 7.9e-15 84.7 53 67.9
SMO367G1063 Selaginella moellendorffii HOM05D004154 ORTHO05D004988 3.9e-14 82.4 151 31.8
PSO729G0146 Papaver somniferum HOM05D004154 ORTHO05D004988 1.5e-13 80.5 53 67.9
Lj8A210T88 Lonicera japonica HOM05D004154 ORTHO05D004988 7.4e-13 78.2 89 49.4
SEGI_34551 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 1.3e-12 77.4 142 35.9
Ca_12802_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 1.4e-11 73.9 135 50.4
Sc07g0009970 Simmondsia chinensis HOM05D004154 ORTHO05D004988 4.0e-11 72.4 90 65.6
PSO339G6280 Papaver somniferum HOM05D004154 ORTHO05D004988 2.0e-10 70.1 40 70.0
Glyma.01G060600 Glycine max HOM05D004154 ORTHO05D004988 8.4e-09 64.7 42 71.4
MD14G1121900 Malus domestica HOM05D004154 ORTHO05D004988 1.4e-08 63.9 39 64.1
Sabra16G0316800 Salix brachista HOM05D001043 ORTHO05D000001 3.2e-08 62.8 38 89.5
Sabra01G0027600 Salix brachista HOM05D001043 ORTHO05D003162 9.3e-08 61.2 38 86.8
Sabra05G0126100 Salix brachista HOM05D000446 ORTHO05D000321 9.3e-08 61.2 38 86.8
Sabra09G0079900 Salix brachista HOM05D000130 ORTHO05D000257 9.3e-08 61.2 38 86.8
Sabra11G0117200 Salix brachista HOM05D001043 ORTHO05D000001 9.3e-08 61.2 38 86.8
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 4.6e-07 58.9 67 40.3
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 4.6e-07 58.9 38 81.6
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 7.9e-07 58.2 66 40.9
CBR_g45660 Chara braunii HOM05D003321 ORTHO05D013943 1.0e-06 57.8 52 48.1
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 1.0e-06 57.8 93 36.6
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 1.0e-06 57.8 95 37.9
Ca_19297_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 1.3e-06 57.4 68 79.4
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 1.3e-06 57.4 69 37.7
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 1.8e-06 57.0 64 40.6
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 2.3e-06 56.6 58 44.8
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 3.9e-06 55.8 64 40.6
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.9e-06 55.8 61 44.3
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 3.9e-06 55.8 61 44.3
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 5.1e-06 55.5 61 42.6
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 8.7e-06 54.7 59 42.4
SMO139G0055 Selaginella moellendorffii HOM05D003321 ORTHO05D013943 8.7e-06 54.7 52 44.2


User provided reference genes

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