Gene: AT4G11080
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G11080
- Transcript Identifier AT4G11080.1
- Gene Type Coding gene
- Location Chr4 : 6760898-6763272 : negative
Gene Family Information
- ID HOM05D004154
- #Genes/#Species 170/94
- Phylogenetic origin
- ID ORTHO05D004988
- #Genes/#Species 166/94
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G11080.1
- symbol 3xHMG-box1
- full_name 3xHigh Mobility Group-box1
- uniprot Q9T012
Descriptions
- Description HMG (high mobility group) box protein
- Computational description HMG (high mobility group) box protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein (TAIR:AT4G23800.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | ISS | Gene Ontology | regulation of transcription, DNA-templated | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 1 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0000793 | IDA | Gene Ontology | condensed chromosome | 2 |
| GO:0000794 | IDA | Gene Ontology | condensed nuclear chromosome | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.3.1 | Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B) |